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Searching for up to 100 curated homologs for Ac3H11_1164 FitnessBrowser__acidovorax_3H11:Ac3H11_1164 (116 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PmdA / Q8RNY0 protocatechuate 4,5-dioxygenase α subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni (see paper)
Q8RNY0 protocatechuate 4,5-dioxygenase (EC 1.13.11.8) from Comamonas testosteroni (see paper)
    37% identity, 99% coverage of query (94.0 bits)

AAK73572.1 PmdA from Comamonas testosteroni (see paper)
    36% identity, 99% coverage of query (92.0 bits)

pmdA / BAI50714.1 protocatechuate 4,5-dioxygenase alpha subunit from Comamonas sp. E6 (see paper)
    36% identity, 99% coverage of query (92.0 bits)

proOa / BAD04057.1 alpha subunit of protocatechuate 4,5-dioxygenase from Pseudomonas straminea (see paper)
    35% identity, 99% coverage of query (90.5 bits)

ligA / P22635 protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) from Sphingobium sp. (strain NBRC 103272 / SYK-6) (see 2 papers)
G2IQQ4 protocatechuate 4,5-dioxygenase (subunit 2/2) (EC 1.13.11.8) from Sphingobium sp. (see paper)
ligA / BAB88742.1 alpha subunit of protocatechuate 4,5-dioxygenase from Sphingomonas paucimobilis (see 5 papers)
    36% identity, 93% coverage of query (73.9 bits)

ligA / BAA97117.1 protocatechuate 4,5-dioxygenase small subunit, partial from Sphingomonas paucimobilis (see 3 papers)
    36% identity, 90% coverage of query (70.1 bits)

Build an alignment

Build an alignment for Ac3H11_1164 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

gllA / Q88JX5 gallate dioxygenase monomer (EC 1.13.11.57) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
GALA_PSEPK / Q88JX5 Gallate dioxygenase; Gallate degradation protein A; EC 1.13.11.57 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
    27% identity, 85% coverage of query (51.2 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory