Sites on a Tree

 

Searching for up to 100 curated homologs for Ac3H11_138 FitnessBrowser__acidovorax_3H11:Ac3H11_138 (307 a.a.)

Found high-coverage hits (≥70%) to 33 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

8dk0A Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound (s)gamma- valerolactone
    31% identity, 85% coverage of query (98.6 bits)

8djzA Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound product
    31% identity, 85% coverage of query (98.6 bits)

8djfA Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound tetrahedral intermediate
    31% identity, 85% coverage of query (98.6 bits)

7risA Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound phosphate
    31% identity, 85% coverage of query (94.7 bits)

Build an alignment

Build an alignment for Ac3H11_138 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

2dsoC / Q99QV3 Crystal structure of d138n mutant of drp35, a 35kda drug responsive protein from staphylococcus aureus (see paper)
    29% identity, 74% coverage of query (92.4 bits)

7rizA / Q6N3R9 Crystal structure of rpa3624, a beta-propeller lactonase from rhodopseudomonas palustris, with active-site bound 2-hydroxyquinoline (see paper)
    29% identity, 85% coverage of query (91.3 bits)

DRP35_STAAN / Q7A338 Lactonase drp35; EC 3.1.1.- from Staphylococcus aureus (strain N315) (see paper)
DRP35_STAAM / Q99QV3 Lactonase drp35; EC 3.1.1.- from Staphylococcus aureus (strain Mu50 / ATCC 700699) (see paper)
    29% identity, 74% coverage of query (90.5 bits)

DRP35_STAAU / Q9S0S3 Lactonase drp35; EC 3.1.1.- from Staphylococcus aureus (see paper)
    29% identity, 74% coverage of query (88.6 bits)

gnl / Q01578 gluconolactonase subunit (EC 3.1.1.17) from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (see paper)
GNL_ZYMMO / Q01578 Gluconolactonase; D-glucono-delta-lactone lactonohydrolase; EC 3.1.1.17 from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) (see paper)
Q01578 gluconolactonase (EC 3.1.1.17) from Zymomonas mobilis subsp. mobilis (see paper)
    30% identity, 78% coverage of query (85.1 bits)

DFPA_LOLVU / Q7SIG4 Diisopropyl-fluorophosphatase; DFPase; EC 3.1.8.2 from Loligo vulgaris (Common European squid) (see 6 papers)
Q7SIG4 diisopropyl-fluorophosphatase (EC 3.1.8.2) from Loligo vulgaris (see 10 papers)
3o4pA / Q7SIG4 Dfpase at 0.85 angstrom resolution (h atoms included) (see paper)
    30% identity, 85% coverage of query (84.0 bits)

2gvvA Structure of diisopropyl fluorophosphatase (dfpase) in complex with dicyclopentylphosphoroamidate (dcppa)
    30% identity, 85% coverage of query (84.0 bits)

Ga0059261_1893 Xylonolactonase (EC 3.1.1.68) from Sphingomonas koreensis DSMZ 15582
    30% identity, 84% coverage of query (77.0 bits)

Pf6N2E2_5966 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens FW300-N2E2
    26% identity, 83% coverage of query (71.2 bits)

AO356_20235 L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens FW300-N2C3
    26% identity, 83% coverage of query (67.4 bits)

PS417_11020 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas simiae WCS417
    26% identity, 84% coverage of query (66.6 bits)

7zp7A Crystal structure of evolved photoenzyme ent1.3 (truncated) with bound product
    27% identity, 85% coverage of query (66.6 bits)

Pf1N1B4_413 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens FW300-N1B4
    27% identity, 83% coverage of query (65.9 bits)

3e5zA / Q9RXN3 X-ray structure of the putative gluconolactonase in protein family pf08450. Northeast structural genomics consortium target drr130.
    28% identity, 80% coverage of query (63.5 bits)

dhaL / Q0K7D4 L-dehydro-ascorbate lactonase from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (see 2 papers)
    27% identity, 79% coverage of query (57.8 bits)

7plbB / Q9A9Z1 Caulobacter crescentus xylonolactonase with d-xylose (see paper)
    26% identity, 79% coverage of query (57.0 bits)

xylC / A0A0H3C6P8 xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides (strain NA1000 / CB15N) (see 2 papers)
XYLC_CAUVC / Q9A9Z1 D-xylonolactone lactonase; Xylono-1,5-lactonase; EC 3.1.1.110 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) (see 4 papers)
Q9A9Z1 xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides (see 4 papers)
    26% identity, 79% coverage of query (57.0 bits)

7pldB Caulobacter crescentus xylonolactonase with (r)-4-hydroxy-2- pyrrolidone
    26% identity, 79% coverage of query (57.0 bits)

xacC / D4GP31 D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (see 5 papers)
XACC_HALVD / D4GP31 Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
D4GP31 L-arabinonolactonase (EC 3.1.1.15); xylono-1,4-lactonase (EC 3.1.1.68) from Haloferax volcanii (see 2 papers)
    27% identity, 78% coverage of query (56.6 bits)

PS417_07255 Deoxyribonolactonase from Pseudomonas simiae WCS417
PS417_07255 / A0A1N7TX40 2-deoxy-ribono-1,5-lactonase from Pseudomonas simiae (see paper)
    27% identity, 79% coverage of query (55.8 bits)

3dr2A / B0RN69 Structural and functional analyses of xc5397 from xanthomonas campestris: a gluconolactonase important in glucose secondary metabolic pathways (see paper)
    27% identity, 79% coverage of query (55.1 bits)

6rekA Crystal structure of pizza6-sh with cu2+
    29% identity, 82% coverage of query (54.3 bits)

uxuL / B2UIY8 D-galactaro-1,5-lactonase/D-glucaro-1,5-lactonase from Ralstonia pickettii (strain 12J) (see paper)
    29% identity, 87% coverage of query (53.9 bits)

6rejA Crystal structure of pizza6-sh with zn2+
    29% identity, 82% coverage of query (53.9 bits)

PKND_MYCTO / P9WI78 Serine/threonine-protein kinase PknD; EC 2.7.11.1 from Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) (see paper)
PKND_MYCTU / P9WI79 Serine/threonine-protein kinase PknD; EC 2.7.11.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 8 papers)
P9WI79 non-specific serine/threonine protein kinase (EC 2.7.11.1) from Mycobacterium tuberculosis (see 2 papers)
    27% identity, 80% coverage of query (52.8 bits)

PfGW456L13_2118 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens GW456-L13
    24% identity, 85% coverage of query (52.0 bits)

SGL_PSEPU / P0DOV6 6-deoxy-6-sulfogluconolactonase; 6-deoxy-6-sulfogluconolactone lactonase; SGL lactonase; EC 3.1.1.99 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
    25% identity, 79% coverage of query (50.8 bits)

HSERO_RS05225 L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae SmR1
    23% identity, 78% coverage of query (50.4 bits)

PP_1170 D-glucaro-1,5-lactonase UxuL from Pseudomonas putida KT2440
    26% identity, 78% coverage of query (47.0 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory