Searching for up to 100 curated homologs for Ac3H11_3802 FitnessBrowser__acidovorax_3H11:Ac3H11_3802 (205 a.a.)
Found high-coverage hits (≥70%) to 35 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
Q84FZ7 formate dehydrogenase (EC 1.17.1.9) from Methylorubrum extorquens (see paper)
77% identity, 94% coverage of query (326 bits)
phsB / P0A1I1 thiosulfate reductase (quinone) β subunit (EC 1.8.5.5) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 8 papers)
PHSB_SALTY / P0A1I1 Thiosulfate reductase electron transfer subunit PhsB; Thiosulfate reductase subunit beta from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
P0A1I1 thiosulfate reductase (quinone) (subunit 1/2) (EC 1.8.5.5) from Salmonella enterica subsp. enterica serovar Typhimurium (see 2 papers)
TC 5.A.3.5.1 / P0A1I1 Thiosulfate reductase electron transport protein PhsB, component of Thiosulfate reductase, PhsABC (Heinzinger et al., 1995). Menaquinone is the sole electron donor. The endoergonic reduction reaction is driven by the pmf by a reverse loop mechanism. The enzyme can catalyze oxidation of sulfide to sulfite and sulfite to thiosulfate in an exergonic reaction that is pmf-independent from Salmonella typhimurium (see 3 papers)
phsB thiosulfate reductase electron transport protein phsb from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
phsB / AAC36935.1 thiosulfate reductase from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
38% identity, 77% coverage of query (101 bits)
DmsB / b0895 dimethyl sulfoxide reductase subunit B (EC 1.8.5.3) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
dmsB / P18776 dimethyl sulfoxide reductase subunit B (EC 1.8.5.3) from Escherichia coli (strain K12) (see paper)
TC 5.A.3.3.2 / P18776 Anaerobic dimethyl sulfoxide reductase chain B aka DMSO reductase iron-sulfur subunit (DmsB), component of Anaerobic dimethyl sulfoxide (DMSO) reductase, DmsABC from Escherichia coli (see 6 papers)
35% identity, 79% coverage of query (96.3 bits)
DMSB_HALSA / Q9HR73 Putative dimethyl sulfoxide reductase iron-sulfur subunit B; DMSO reductase subunit B from Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium) (see paper)
TC 5.A.3.3.3 / Q9HR73 DmsB (Gamma-1); aka Molybdopterin oxidoreductase, component of Anaerobic dimethylsulfoxide (DMSO)/trimethylamine-N-oxide (TMAO) reductase from Halobacterium salinarium (Halobacterium halobium) (see paper)
35% identity, 81% coverage of query (96.3 bits)
P18776 Anaerobic dimethyl sulfoxide reductase chain B; DMSO reductase iron-sulfur subunit from Escherichia coli (strain K12)
35% identity, 79% coverage of query (96.3 bits)
YnfG / b1589 putative oxidoreductase YnfG (EC 1.97.1.9) from Escherichia coli K-12 substr. MG1655 (see paper)
ynfG / P0AAJ1 putative oxidoreductase YnfG (EC 1.97.1.9) from Escherichia coli (strain K12) (see 2 papers)
TC 5.A.3.3.1 / P0AAJ1 Probable anaerobic dimethyl sulfoxide reductase chain ynfG aka DMSO reductase iron-sulfur subunit, component of Anaerobic dimethylsulfoxide (DMSO) reductase, (YnfEFGH) from Escherichia coli (see 3 papers)
35% identity, 77% coverage of query (95.9 bits)
TC 5.A.3.10.1 / Q7WMZ5 Tetrathionate reductase subunit B, component of Tetrathionate reductase, TtrABC from Bordetella bronchiseptica (Alcaligenes bronchisepticus) (see paper)
36% identity, 79% coverage of query (91.7 bits)
ttrB / Q7CQM9 tetrathionate reductase β subunit from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 3 papers)
TTRB_SALTY / Q7CQM9 Tetrathionate reductase subunit B; Tetrathionate reductase electron transport protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 3 papers)
ttrB / CAB37414.1 tetrathionate reductase subunit B (TtrB) from Salmonella enterica subsp. enterica serovar Typhimurium (see 2 papers)
34% identity, 79% coverage of query (91.3 bits)
YdhX / b1671 putative 4Fe-4S ferredoxin-like protein YdhX from Escherichia coli K-12 substr. MG1655 (see 4 papers)
YDHX_ECOLI / P77375 Uncharacterized ferredoxin-like protein YdhX from Escherichia coli (strain K12) (see paper)
31% identity, 99% coverage of query (89.7 bits)
soeB / D3RNN7 SoeB (EC 1.8.5.6) from Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) (see paper)
SOEB_ALLVD / D3RNN7 Sulfite dehydrogenase subunit B; Sulfite dehydrogenase iron-sulfur subunit; Sulfite-oxidizing enzyme subunit B from Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) (Chromatium vinosum) (see paper)
D3RNN7 sulfite dehydrogenase (quinone) (subunit 2/3) (EC 1.8.5.6) from Allochromatium vinosum (see paper)
31% identity, 93% coverage of query (89.4 bits)
2vpwF / Q72LA5 Polysulfide reductase with bound menaquinone (see paper)
36% identity, 80% coverage of query (88.2 bits)
psrB / P31076 polysulfide reductase β subunit (EC 1.12.98.4) from Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) (see 2 papers)
TC 5.A.3.5.2 / P31076 Polysulfide reductase chain B aka Sulfur reductase chain B, component of Polysulfide reductase, PsrABC from Wolinella succinogenes (see 2 papers)
34% identity, 78% coverage of query (88.2 bits)
2vpyF Polysulfide reductase with bound quinone inhibitor, pentachlorophenol (pcp)
36% identity, 80% coverage of query (88.2 bits)
TC 5.A.3.11.1 / Q5P036 Molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase, component of Phenylacetyl-CoA:acceptor oxidoreductase (see paper)
33% identity, 80% coverage of query (86.7 bits)
YjcJ / b4072 putative menaquinol-cytochrome c reductase 4Fe-4S subunit (EC 7.1.1.8) from Escherichia coli K-12 substr. MG1655 (see paper)
32% identity, 89% coverage of query (86.3 bits)
E9RFC9 selenate reductase (EC 1.97.1.9) from Mesobacillus selenatarsenatis (see paper)
30% identity, 86% coverage of query (85.9 bits)
Build an alignment for Ac3H11_3802 and 16 homologs with ≥ 30% identity
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HydL / b2996 hydrogenase 2 iron-sulfur protein (EC 1.12.5.1) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
hybA / P0AAJ8 hydrogenase 2 iron-sulfur protein from Escherichia coli (strain K12) (see 6 papers)
29% identity, 86% coverage of query (85.9 bits)
padC / A0A2R4BI99 phenylacetyl-CoA:acceptor oxidoreductase subunit γ (EC 1.17.5.1) from Thauera aromatica K172 (see paper)
33% identity, 77% coverage of query (83.6 bits)
6f0kB / D0MDD5 Alternative complex iii (see paper)
30% identity, 77% coverage of query (80.5 bits)
arrB / Q7WTT9 respiratory arsenate reductase small subunit (EC 1.20.99.1) from Shewanella sp. (strain ANA-3) (see 3 papers)
ARRB_SHESA / Q7WTT9 Arsenate respiratory reductase iron-sulfur subunit ArrB; Arsenate respiratory reductase small subunit; ARR small subunit from Shewanella sp. (strain ANA-3) (see 4 papers)
6cz7B / Q7WTT9 The arsenate respiratory reductase (arr) complex from shewanella sp. Ana-3 (see paper)
arrB / AAQ01673.1 ArrB from Shewanella sp. ANA-3 (see 2 papers)
29% identity, 80% coverage of query (80.1 bits)
hmcB / P33389 Hmc complex B subunit from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 11 papers)
30% identity, 84% coverage of query (79.3 bits)
TC 5.A.3.11.2 / O67279 SreB aka DmsB1 aka DMSO reductase chain B, component of The cytoplasmic sulfur/tetrathionate/polysulfide oxidoreductase, SreABC (Guiral et al., 2005) [While SreA and B most resemble 5.A.3.11.1, SreC most resembles 5.A.3.3.2.] from Aquifex aeolicus (see paper)
30% identity, 84% coverage of query (78.6 bits)
sirC / Q8EJI2 SirC ferredoxin from Shewanella oneidensis (strain MR-1) (see 10 papers)
29% identity, 79% coverage of query (77.4 bits)
7qv7A / A0A097ATJ9 Cryo-em structure of hydrogen-dependent co2 reductase. (see paper)
30% identity, 91% coverage of query (76.6 bits)
9HcB / B8J3C5 nonaheme cytochrome c complex B subunit from Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) (see 12 papers)
29% identity, 83% coverage of query (71.6 bits)
arxB / Q0AC67 anaerobic arsenite oxidase small subunit ArxB (EC 1.20.99.1) from Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) (see 6 papers)
29% identity, 81% coverage of query (71.6 bits)
HevB / b2724 formate hydrogenlyase subunit HycB from Escherichia coli K-12 substr. MG1655 (see 5 papers)
hycB / P0AAK1 hydrogenase 3 iron-sulfur protein HycB (EC 1.12.7.2) from Escherichia coli (strain K12) (see 7 papers)
TC 3.D.1.9.2 / P0AAK3 Formate hydrogenlyase subunit 2, component of Hydrogenase 3, Hyc. Catalyzes H2 from Shigella flexneri
29% identity, 94% coverage of query (71.2 bits)
6lodB / A7NJ88 Cryo-em structure of the air-oxidized photosynthetic alternative complex iii from roseiflexus castenholzii (see paper)
27% identity, 77% coverage of query (68.6 bits)
7z0sB / P0AAK1 Structure of the escherichia coli formate hydrogenlyase complex (anaerobic preparation, without formate dehydrogenase h) (see paper)
30% identity, 78% coverage of query (66.6 bits)
YgfT / b2887 putative oxidoreductase YgfT from Escherichia coli K-12 substr. MG1655 (see 2 papers)
UACF_ECOLI / Q46820 Putative oxidoreductase UacF; Uric acid degradation formate-related element from Escherichia coli (strain K12) (see paper)
32% identity, 87% coverage of query (66.2 bits)
qrcC / Q72E85 cytochrome c3:menaquinone reductase subunit C from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 3 papers)
QRCC_DESVH / Q72E85 Menaquinone reductase, iron-sulfur cluster-binding subunit; Quinone reductase complex subunit C; Type I cytochrome c3:menaquinone oxidoreductase subunit C; EC 1.97.-.- from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 2 papers)
29% identity, 78% coverage of query (65.9 bits)
hytE2 / S5ZJ62 hydrogenase (NADP+,ferredoxin) ε2 subunit from Clostridium autoethanogenum DSM 10061 (see paper)
35% identity, 78% coverage of query (65.5 bits)
FdnH / b1475 formate dehydrogenase N subunit β from Escherichia coli K-12 substr. MG1655 (see 5 papers)
fdnH / P0AAJ3 formate dehydrogenase N subunit β from Escherichia coli (strain K12) (see 5 papers)
FDNH_ECOLI / P0AAJ3 Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; Anaerobic formate dehydrogenase iron-sulfur subunit; Formate dehydrogenase-N subunit beta; FDH-N subunit beta from Escherichia coli (strain K12) (see 2 papers)
P0AAJ3 formate dehydrogenase-N (subunit 2/3) (EC 1.17.5.3) from Escherichia coli (see paper)
TC 5.A.3.2.1 / P0AAJ3 FdnH aka B1475, component of Anaerobic, respiratory, membrane-bound formate dehydrogenase, FdnGHI. Two protons are consumed in the cytoplasm while two protons are released in the periplasm, contributing to the pmf from Escherichia coli (see 5 papers)
fdnH / RF|NP_415992 formate dehydrogenase-N subunit beta from Escherichia coli K12 (see 8 papers)
25% identity, 97% coverage of query (62.8 bits)
1kqfB / P0AAJ3 Formate dehydrogenase n from e. Coli (see paper)
25% identity, 97% coverage of query (62.4 bits)
8c0zC / Q5P144 Cryoem structure of a tungsten-containing aldehyde oxidoreductase from aromatoleum aromaticum (see paper)
29% identity, 77% coverage of query (59.3 bits)
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Lawrence Berkeley National Laboratory