Sites on a Tree

 

Searching for up to 100 curated homologs for Ac3H11_3895 FitnessBrowser__acidovorax_3H11:Ac3H11_3895 (243 a.a.)

Found high-coverage hits (≥70%) to 2 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

YhgH / b3413 DNA utilization protein YhgH from Escherichia coli K-12 substr. MG1655 (see 4 papers)
GNTX_ECOLI / P46846 DNA utilization protein YhgH; Protein GntX from Escherichia coli (strain K12) (see paper)
    35% identity, 84% coverage of query (89.0 bits)

Build an alignment

Build an alignment for Ac3H11_3895 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

TC 3.A.11.1.4 / G2JSZ8 Competence protein ComFC, component of The phagosome escape and virulence competence system, ComEA-EC, FA, FC.  Functions in conjunction with the pseudopilus described under TC# 3.A.14.1.2 from Listeria monocytogenes J0161
    29% identity, 83% coverage of query (79.3 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory