Sites on a Tree

 

Searching for up to 100 curated homologs for Ac3H11_417 FitnessBrowser__acidovorax_3H11:Ac3H11_417 (451 a.a.)

Found high-coverage hits (≥70%) to 47 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

CNBH_COMTE / Q38M35 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni (Pseudomonas testosteroni) (see paper)
    38% identity, 86% coverage of query (200 bits)

Build an alignment

Build an alignment for Ac3H11_417 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

3h0lA / O66610 Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
    26% identity, 98% coverage of query (119 bits)

3h0mA Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus
    26% identity, 98% coverage of query (119 bits)

AMI1_ORYSJ / Q7XTK3 Amidase 1; OsAMI1; EC 3.5.1.4 from Oryza sativa subsp. japonica (Rice) (see paper)
    32% identity, 86% coverage of query (118 bits)

gatA / Q9RTA9 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7; EC 6.3.5.6) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) (see paper)
    32% identity, 84% coverage of query (118 bits)

Q9X0Z9 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Thermotoga maritima (see paper)
    27% identity, 86% coverage of query (118 bits)

6diiH / Q7XJJ7 Structure of arabidopsis fatty acid amide hydrolase in complex with methyl linolenyl fluorophosphonate (see paper)
    27% identity, 89% coverage of query (112 bits)

FAAH_ARATH / Q7XJJ7 Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana (Mouse-ear cress) (see 10 papers)
Q7XJJ7 fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana (see paper)
    27% identity, 89% coverage of query (112 bits)

iaaH / P06618 indoleacetamide hydrolase (EC 3.5.1.4) from Pseudomonas savastanoi (see 3 papers)
    28% identity, 97% coverage of query (111 bits)

DUR1_LACKL / A5H0J2 Urea amidolyase; Pyrimidine-degrading protein 13,15; Uracil catabolism protein 3,5; EC 6.3.4.6; EC 3.5.1.54 from Lachancea kluyveri (Yeast) (Saccharomyces kluyveri) (see paper)
    31% identity, 82% coverage of query (111 bits)

tms2 / P0A2X0 indoleacetamide hydrolase (EC 3.5.1.4) from Rhizobium radiobacter (see paper)
    28% identity, 88% coverage of query (103 bits)

4gysB / Q0BRB0 Granulibacter bethesdensis allophanate hydrolase co-crystallized with malonate (see paper)
    30% identity, 90% coverage of query (103 bits)

Q0BRB0 allophanate hydrolase (EC 3.5.1.54) from Granulibacter bethesdensis (see 2 papers)
    30% identity, 90% coverage of query (103 bits)

iaaH / GB|AAA17679.1 indoleacetamide hydrolase; EC 3.5.1.- from Pseudomonas syringae pv. syringae (see paper)
    30% identity, 86% coverage of query (102 bits)

AMI1 / Q9FR37 indole-3-acetamide amidohydrolase (EC 3.5.1.4) from Arabidopsis thaliana (see 5 papers)
AMI1_ARATH / Q9FR37 Amidase 1; AtAMI1; Translocon at the outer membrane of chloroplasts 64-I; AtTOC64-I; EC 3.5.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see 6 papers)
    30% identity, 81% coverage of query (102 bits)

FAAH_ORYSJ / Q0JFH7 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Oryza sativa subsp. japonica (Rice) (see paper)
    25% identity, 90% coverage of query (100 bits)

A0A1D8PDC6 allophanate hydrolase (EC 3.5.1.54) from Candida albicans (see paper)
    28% identity, 85% coverage of query (100 bits)

DUR1,2 likely multifunctional urea amidolyase from Candida albicans (see paper)
    28% identity, 85% coverage of query (100 bits)

P63488 glutaminyl-tRNA synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.7) from Staphylococcus aureus (see paper)
2dqnA / P63488 Structure of tRNA-dependent amidotransferase gatcab complexed with asn (see paper)
    25% identity, 86% coverage of query (99.8 bits)

2f2aA Structure of tRNA-dependent amidotransferase gatcab complexed with gln
    25% identity, 86% coverage of query (99.8 bits)

P95896 amidase (EC 3.5.1.4); nitrilase (EC 3.5.5.1) from Saccharolobus solfataricus (see 3 papers)
    26% identity, 87% coverage of query (98.2 bits)

FAAH_MEDTR / G7ISB0 Fatty acid amide hydrolase; N-acylethanolamine amidohydrolase; EC 3.5.1.- from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
    27% identity, 86% coverage of query (97.4 bits)

GATA_ARATH / Q9LI77 Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Glu-AdT subunit A; EC 6.3.5.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
    27% identity, 87% coverage of query (96.7 bits)

AMD1_GIBM7 / P9WEP6 Amidase 1; Fusarium detoxification of benzoxazolinone cluster 1 protein AMD1; FDB1 cluster protein AMD1; EC 3.5.1.4 from Gibberella moniliformis (strain M3125 / FGSC 7600) (Maize ear and stalk rot fungus) (Fusarium verticillioides) (see 4 papers)
    26% identity, 75% coverage of query (95.1 bits)

hydA / A0A0A1H115 4-hydroxybenzoate 1-phenylethylidene hydrazidase from Microbacterium hydrocarbonoxydans (see paper)
    29% identity, 90% coverage of query (94.7 bits)

5h6sC Crystal structure of hydrazidase s179a mutant complexed with a substrate (see paper)
    29% identity, 90% coverage of query (94.0 bits)

3kfuE / Q9LCX3 Crystal structure of the transamidosome (see paper)
    31% identity, 91% coverage of query (94.0 bits)

P22984 amidase (EC 3.5.1.4) from Rhodococcus erythropolis (see 2 papers)
Q7DKE4 amidase (EC 3.5.1.4) from Rhodococcus sp. N-771 (see paper)
amdA / AAA62721.1 enantiomer-selective amidase from Brevibacterium sp (see paper)
CAA38009.1 amidase from Rhodococcus sp (see paper)
    28% identity, 86% coverage of query (92.0 bits)

DUR1,2 / P32528 urea amidolyase (EC 6.3.4.6) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 6 papers)
DUR1_YEAST / P32528 Urea amidolyase; EC 6.3.4.6; EC 3.5.1.54 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
P32528 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Saccharomyces cerevisiae (see 3 papers)
    29% identity, 79% coverage of query (91.7 bits)

Q9ALV2 allophanate hydrolase (EC 3.5.1.54) from Enterobacter cloacae (see 2 papers)
    29% identity, 85% coverage of query (91.3 bits)

B1GY01 nitrilase (EC 3.5.5.1) from Rhodococcus erythropolis (see paper)
    27% identity, 86% coverage of query (91.3 bits)

3a1iA / Q7DKE4 Crystal structure of rhodococcus sp. N-771 amidase complexed with benzamide (see paper)
    28% identity, 86% coverage of query (90.5 bits)

Q6CP22 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Kluyveromyces lactis (see 3 papers)
    28% identity, 85% coverage of query (90.1 bits)

atzF / Q936X2 allophanate hydrolase subunit from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZF_PSESD / Q936X2 Allophanate hydrolase; EC 3.5.1.54 from Pseudomonas sp. (strain ADP) (see 2 papers)
Q936X2 allophanate hydrolase (EC 3.5.1.54) from Pseudomonas sp. ADP (see paper)
    29% identity, 87% coverage of query (89.4 bits)

DUR1.2 / AAC41643.1 urea amidolyase from Saccharomyces cerevisiae (see paper)
    28% identity, 79% coverage of query (89.0 bits)

AMD2_GIBM7 / W7MTI6 Amidase 2; Fusarium detoxification of benzoxazolinone cluster 2 protein AMD2; FDB2 cluster protein AMD2; EC 3.5.1.4 from Gibberella moniliformis (strain M3125 / FGSC 7600) (Maize ear and stalk rot fungus) (Fusarium verticillioides) (see 4 papers)
    26% identity, 96% coverage of query (88.2 bits)

AMID_RHORH / P84650 Enantioselective amidase; EC 3.5.1.4 from Rhodococcus rhodochrous
    29% identity, 85% coverage of query (87.4 bits)

gatA / O06491 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) from Bacillus subtilis (strain 168) (see paper)
GATA_BACSU / O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis (strain 168) (see 2 papers)
    27% identity, 90% coverage of query (85.9 bits)

GATA_HUMAN / Q9H0R6 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; Glutaminyl-tRNA synthase-like protein 1; EC 6.3.5.7 from Homo sapiens (Human) (see 3 papers)
Q9H0R6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Homo sapiens (see paper)
    23% identity, 97% coverage of query (83.6 bits)

F6N111 aryl-acylamidase (EC 3.5.1.13) from Paracoccus sp. M1-1 (see paper)
G9FKH7 amidase (EC 3.5.1.4) from Paracoccus sp. (see paper)
    28% identity, 74% coverage of query (80.5 bits)

amdA / P27765 nicotinamidase (EC 3.5.1.19) from Pseudomonas chlororaphis (see paper)
    27% identity, 89% coverage of query (76.3 bits)

1o9oA / Q9ZIV5 Crystal structure of the s131a mutant of malonamidase e2 complexed with malonamate from bradyrhizobium japonicum (see paper)
    24% identity, 87% coverage of query (76.3 bits)

tpdC / M1X895 (Z)-N,N'-(but-2-ene-2,3-diyl)diacetamide hydrolase from Rhodococcus sp. TMP1 (see paper)
tpdC / CCN27361.1 amidase from Rhodococcus sp. TMP1 (see paper)
    28% identity, 86% coverage of query (72.4 bits)

1ocmA The crystal structure of malonamidase e2 covalently complexed with pyrophosphate from bradyrhizobium japonicum
    25% identity, 87% coverage of query (72.4 bits)

Q9CZN8 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Mus musculus (see paper)
    24% identity, 86% coverage of query (71.6 bits)

FAAH4_CAEEL / Q9U217 Monoglyceride lipase faah-4; Fatty acid amide hydrolase 4; EC 3.1.1.23; EC 3.5.1.99 from Caenorhabditis elegans (see paper)
    27% identity, 71% coverage of query (68.2 bits)

3a2qA / P13398 Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate (see paper)
    25% identity, 97% coverage of query (57.4 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory