Sites on a Tree

 

Searching for up to 100 curated homologs for BPHYT_RS11250 FitnessBrowser__BFirm:BPHYT_RS11250 (365 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q5LX24 lysine 6-dehydrogenase (EC 1.4.1.18) from Ruegeria pomeroyi (see paper)
    54% identity, 97% coverage of query (359 bits)

Q3S559 lysine 6-dehydrogenase (EC 1.4.1.18) from Achromobacter denitrificans (see paper)
    51% identity, 99% coverage of query (345 bits)

lysDH / Q9AJC6 L-lysine 6-dehydrogenase subunit (EC 1.4.1.18) from Geobacillus stearothermophilus (see paper)
LYSDH_GEOSE / Q9AJC6 Lysine 6-dehydrogenase; L-lysine 6-dehydrogenase; L-lysine epsilon-dehydrogenase; EC 1.4.1.18 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
Q9AJC6 lysine 6-dehydrogenase (EC 1.4.1.18) from Geobacillus stearothermophilus (see 2 papers)
    31% identity, 93% coverage of query (136 bits)

Build an alignment

Build an alignment for BPHYT_RS11250 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory