Searching for up to 100 curated homologs for BPHYT_RS30445 FitnessBrowser__BFirm:BPHYT_RS30445 (347 a.a.)
Found high-coverage hits (≥70%) to 61 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
4oanA / Q2IWM2 Crystal structure of a trap periplasmic solute binding protein from rhodopseudomonas palustris haa2 (rpb_2686), target efi-510221, with density modeled as (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2- acetolactate) (see paper)
62% identity, 90% coverage of query (406 bits)
YiaO / b3579 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yiaO / P37676 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein from Escherichia coli (strain K12) (see 5 papers)
YIAO_ECOLI / P37676 2,3-diketo-L-gulonate-binding periplasmic protein YiaO; 2,3-DKG-binding protein; Extracytoplasmic solute receptor protein YiaO from Escherichia coli (strain K12) (see paper)
TC 2.A.56.1.2 / P37676 YiaO, component of The 2,3-diketo-L-gulonate (2,3-DKG) transporter, YiaMNO [2,3-KDG is a breakdown product of L-ascorbate] from Escherichia coli (see 6 papers)
32% identity, 84% coverage of query (170 bits)
4mnpA / Q8RDN9 Structure of the sialic acid binding protein from fusobacterium nucleatum subsp. Nucleatum atcc 25586 (see paper)
31% identity, 82% coverage of query (155 bits)
DCTP_VEREI / A1WPV4 Solute-binding protein Veis_3954 from Verminephrobacter eiseniae (strain EF01-2) (see paper)
33% identity, 73% coverage of query (150 bits)
4mmpA Structure of sialic acid binding protein from pasturella multocida (see paper)
34% identity, 77% coverage of query (150 bits)
4pakA / A1WPV4 Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to (r)- pantoic acid (see paper)
33% identity, 73% coverage of query (150 bits)
4pddA / Q12HD7 Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
30% identity, 78% coverage of query (149 bits)
4p9kA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to d- erythronate with residual density suggestive of superposition with copurified alternative ligand.
33% identity, 73% coverage of query (149 bits)
Build an alignment for BPHYT_RS30445 and 8 homologs with ≥ 30% identity
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PP_1169 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component from Pseudomonas putida KT2440
28% identity, 88% coverage of query (146 bits)
4xfeA / I3UZ52 Crystal structure of a trap periplasmic solute binding protein from pseudomonas putida f1 (pput_1203), target efi-500184, with bound d- glucuronate
28% identity, 86% coverage of query (142 bits)
DCTP_ROSDO / Q16BC9 Solute-binding protein RD1_1052 from Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) (see paper)
32% identity, 76% coverage of query (142 bits)
4pc9A / Q16BC9 Crystal structure of a trap periplasmic solute binding protein from rosenbacter denitrificans och 114 (rd1_1052, target efi-510238) with bound d-mannonate (see paper)
32% identity, 76% coverage of query (142 bits)
4pcdA Crystal structure of a trap periplasmic solute binding protein from roseobacter denitrificans och 114 (rd1_1052, target efi-510238) with bound l-galactonate
32% identity, 76% coverage of query (142 bits)
Psest_2125 D-gluconate TRAP transporter, periplasmic component from Pseudomonas stutzeri RCH2
30% identity, 77% coverage of query (139 bits)
4magA Crystal structure of the periplasmic sialic acid binding protein from vibrio cholerea (see paper)
30% identity, 77% coverage of query (139 bits)
SIAP_VIBCH / Q9KR64 Sialic acid-binding periplasmic protein SiaP from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see 2 papers)
TC 2.A.56.1.6 / Q9KR64 C4-dicarboxylate-binding periplasmic protein, component of The Na+-dependent sialic acid uptake porter, SiaPQM. SiaQ and SiaM form a 1:1 stoichiometric complex from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
30% identity, 77% coverage of query (139 bits)
7a5qB Crystal structure of vcsiap bound to sialic acid
30% identity, 77% coverage of query (139 bits)
7a5qA Crystal structure of vcsiap bound to sialic acid
30% identity, 77% coverage of query (139 bits)
4pdhA / Q12CD8 Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_1871, target efi-510164) bound to d- erythronate (see paper)
31% identity, 73% coverage of query (136 bits)
TC 2.A.56.1.9 / R4JTF7 Putative TRAP transporter solute receptor DctP, component of The possible disulfide 3,3'-dithiodipropionic acid (DTDP) tripartite transporter, DctMPQ from Advenella mimigardefordensis DPN7
30% identity, 84% coverage of query (136 bits)
7bbrA / R4JTF7 Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
31% identity, 70% coverage of query (135 bits)
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate
31% identity, 70% coverage of query (135 bits)
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate
31% identity, 70% coverage of query (135 bits)
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate
31% identity, 70% coverage of query (135 bits)
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid
31% identity, 70% coverage of query (135 bits)
Ac3H11_3226 gluconate TRAP transporter, periplasmic solute-binding component from Acidovorax sp. GW101-3H11
29% identity, 82% coverage of query (134 bits)
4xeqB Crystal structure of a trap periplasmic solute binding protein from desulfovibrio vulgaris (deval_0042, target efi-510114) bound to copurified (r)-pantoic acid
31% identity, 78% coverage of query (134 bits)
DCTP_RHOCA / P37735 C4-dicarboxylate-binding periplasmic protein DctP from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see 3 papers)
TC 2.A.56.1.1 / P37735 DctP, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see paper)
32% identity, 75% coverage of query (133 bits)
4p8bA / Q0KC03 Crystal structure of a trap periplasmic solute binding protein from ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate) (see paper)
30% identity, 87% coverage of query (132 bits)
4ovrA / A7IKQ4 Crystal structure of a trap periplasmic solute binding protein from xanthobacter autotrophicus py2, target efi-510329, with bound beta-d- galacturonate (see paper)
29% identity, 79% coverage of query (127 bits)
4x8rA / A3PLM5 Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
27% identity, 81% coverage of query (127 bits)
4pbqA Crystal structure of a trap periplasmic solute binding protein from haemophilus influenzae rdaw (hicg_00826, target efi-510123) with bound l-gulonate (see paper)
31% identity, 82% coverage of query (127 bits)
4n8yA / A5E8D2 Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. Btai1 b (bbta_0128), target efi-510056 (bbta_0128), complex with alpha/beta-d-galacturonate (see paper)
26% identity, 84% coverage of query (125 bits)
7t3eA / Q6LPV9 Structure of the sialic acid bound tripartite atp-independent periplasmic (trap) periplasmic component siap from photobacterium profundum (see paper)
29% identity, 78% coverage of query (125 bits)
DCTP_CHRSD / Q1QUN2 Solute-binding protein Csal_2479 from Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) (see paper)
28% identity, 77% coverage of query (124 bits)
4pfbA / Q8RE65 Crystal structure of a trap periplasmic solute binding protein from fusobacterium nucleatun (fn1258, target efi-510120) with bound sn- glycerol-3-phosphate (see paper)
29% identity, 76% coverage of query (124 bits)
4p3lA / Q1QUN2 Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085, with bound glucuronate, spg p6122 (see paper)
28% identity, 77% coverage of query (124 bits)
4nq8B / A0A0H3LPK2 Crystal structure of a trap periplasmic solute binding protein from bordetella bronchispeptica (bb3421), target efi-510039, with density modeled as pantoate (see paper)
26% identity, 71% coverage of query (121 bits)
4ovtA / A6X5V3 Crystal structure of a trap periplasmic solute binding protein from ochrobacterium anthropi (oant_3902), target efi-510153, with bound l- fuconate (see paper)
30% identity, 80% coverage of query (120 bits)
DCTP_OLEA2 / Q312S0 Isethionate-binding periplasmic protein DctP; TRAP transporter, DctP solute-binding subunit from Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) (Desulfovibrio alaskensis) (see paper)
27% identity, 88% coverage of query (117 bits)
4o8mA / A6VKP1 Crystal structure of a trap periplasmic solute binding protein actinobacillus succinogenes 130z, target efi-510004, with bound l- galactonate (see paper)
25% identity, 80% coverage of query (115 bits)
DCTP1_POLSJ / Q128M1 Solute-binding protein Bpro_3107 from Polaromonas sp. (strain JS666 / ATCC BAA-500) (see paper)
26% identity, 73% coverage of query (113 bits)
4mijA / Q128M1 Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-galacturonate, space group p21 (see paper)
26% identity, 73% coverage of query (112 bits)
4x04A / A8AR30 Crystal structure of a trap periplasmic solute binding protein from citrobacter koseri (cko_04899, target efi-510094) with bound d- glucuronate
25% identity, 83% coverage of query (112 bits)
4mhfA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-glucuronate, space group p21
26% identity, 73% coverage of query (112 bits)
Shew_1446 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component from Shewanella loihica PV-4
DCTP_SHELP / A3QCW5 C4-dicarboxylate-binding periplasmic protein DctP from Shewanella loihica (strain ATCC BAA-1088 / PV-4) (see 2 papers)
28% identity, 77% coverage of query (108 bits)
4n8gA / Q1QZT7 Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_0660), target efi-501075, with bound d-alanine-d-alanine (see paper)
28% identity, 78% coverage of query (106 bits)
4n91A / C7RDZ3 Crystal structure of a trap periplasmic solute binding protein from anaerococcus prevotii dsm 20548 (apre_1383), target efi-510023, with bound alpha/beta d-glucuronate (see paper)
25% identity, 84% coverage of query (104 bits)
4n6kA / C6BWG5 Crystal structure of a trap periplasmic solute binding protein from desulfovibrio salexigens dsm2638, target efi-510113 (desal_0342), complex with diglycerolphosphate (see paper)
27% identity, 73% coverage of query (99.8 bits)
4nguA / Q311Q1 Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_1548), target efi-510103, with bound d-ala-d-ala (see paper)
28% identity, 78% coverage of query (96.3 bits)
DCTP_SULSN / A3T0D1 Solute-binding protein NAS141_03721 from Sulfitobacter sp. (strain NAS-14.1) (see paper)
26% identity, 78% coverage of query (92.0 bits)
TC 2.A.56.1.7 / Q930W1 ABC transporter, periplasmic solute-binding protein, component of The malonate uptake transporter, MatPQM. Regulated by the GtrA transcriptional activator (Chen et al. 2010). MatM is fused in a single protein C-terminal to MatA (malonyl-CoA decarboxylase) from Rhizobium meliloti (strain 1021)
23% identity, 86% coverage of query (56.2 bits)
DCTP_ALBFT / Q21XD7 Solute-binding protein Rfer_1840 from Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Rhodoferax ferrireducens) (see paper)
24% identity, 78% coverage of query (55.8 bits)
4napD / Q315G1 Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634), target efi-510102, with bound d-tryptophan (see paper)
20% identity, 80% coverage of query (53.5 bits)
4pgpA Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634, target efi-510120) with bound 3-indole acetic acid
20% identity, 80% coverage of query (53.5 bits)
4pgnA Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634, target efi-510120) with bound indole pyruvate
20% identity, 80% coverage of query (53.5 bits)
DCTP2_OLEA2 / Q315G1 Solute-binding protein Dde_0634 from Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) (Desulfovibrio alaskensis) (see paper)
20% identity, 80% coverage of query (53.1 bits)
7nraBBB / A3K0X1 7nraBBB (see paper)
21% identity, 78% coverage of query (52.4 bits)
7nraAAA / A3K0X1 7nraAAA (see paper)
21% identity, 78% coverage of query (52.0 bits)
2pfyA / Q7VXB1 Crystal structure of dctp7, a bordetella pertussis extracytoplasmic solute receptor binding pyroglutamic acid (see paper)
24% identity, 86% coverage of query (51.2 bits)
4pe3A / A3PQU4 Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_3620, target efi-510199), apo open structure (see paper)
23% identity, 85% coverage of query (46.2 bits)
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