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Searching for up to 100 curated homologs for BPHYT_RS32435 FitnessBrowser__BFirm:BPHYT_RS32435 (310 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

FdoH / b3893 formate dehydrogenase O subunit β (EC 1.17.5.3) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
fdoH / P0AAJ5 formate dehydrogenase O subunit β (EC 1.17.5.3) from Escherichia coli (strain K12) (see 3 papers)
    68% identity, 97% coverage of query (424 bits)

FdnH / b1475 formate dehydrogenase N subunit β from Escherichia coli K-12 substr. MG1655 (see 5 papers)
fdnH / P0AAJ3 formate dehydrogenase N subunit β from Escherichia coli (strain K12) (see 5 papers)
FDNH_ECOLI / P0AAJ3 Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; Anaerobic formate dehydrogenase iron-sulfur subunit; Formate dehydrogenase-N subunit beta; FDH-N subunit beta from Escherichia coli (strain K12) (see 2 papers)
P0AAJ3 formate dehydrogenase-N (subunit 2/3) (EC 1.17.5.3) from Escherichia coli (see paper)
TC 5.A.3.2.1 / P0AAJ3 FdnH aka B1475, component of Anaerobic, respiratory, membrane-bound formate dehydrogenase, FdnGHI. Two protons are consumed in the cytoplasm while two protons are released in the periplasm, contributing to the pmf from Escherichia coli (see 5 papers)
fdnH / RF|NP_415992 formate dehydrogenase-N subunit beta from Escherichia coli K12 (see 8 papers)
    68% identity, 95% coverage of query (415 bits)

1kqfB / P0AAJ3 Formate dehydrogenase n from e. Coli (see paper)
    68% identity, 93% coverage of query (411 bits)

fdnH-1 / Q72EJ0 formate dehydrogenase 1 β subunit (EC 1.17.1.9) from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 4 papers)
    34% identity, 74% coverage of query (130 bits)

Build an alignment

Build an alignment for BPHYT_RS32435 and 4 homologs with ≥ 30% identity

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Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Additional hits (identity < 30%)

ttrB / Q7CQM9 tetrathionate reductase β subunit from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 3 papers)
TTRB_SALTY / Q7CQM9 Tetrathionate reductase subunit B; Tetrathionate reductase electron transport protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 3 papers)
ttrB / CAB37414.1 tetrathionate reductase subunit B (TtrB) from Salmonella enterica subsp. enterica serovar Typhimurium (see 2 papers)
    29% identity, 73% coverage of query (96.7 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory