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Searching for up to 100 curated homologs for BWI76_RS15220 FitnessBrowser__Koxy:BWI76_RS15220 (314 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

4ln1B / Q81EP4 Crystal structure of l-lactate dehydrogenase from bacillus cereus atcc 14579 complexed with calcium, nysgrc target 029452
    42% identity, 99% coverage of query (264 bits)

LDH1_STAAE / A6QDL6 L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus (strain Newman) (see paper)
LDH1_STAAC / Q5HJD7 L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus (strain COL) (see paper)
    41% identity, 99% coverage of query (257 bits)

3h3jB / Q5HJD7 Crystal structure of lactate dehydrogenase mutant (a85r) from staphylococcus aureus complexed with NAD and pyruvate
    41% identity, 98% coverage of query (255 bits)

LDH_BACSU / P13714 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Bacillus subtilis (strain 168) (see paper)
    42% identity, 98% coverage of query (254 bits)

W8CXQ9 L-lactate dehydrogenase (EC 1.1.1.27) from Weizmannia coagulans (see paper)
    39% identity, 98% coverage of query (253 bits)

LDH_LACLN / D8KFT1 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactococcus lactis subsp. cremoris (strain NZ9000) (see paper)
    40% identity, 100% coverage of query (251 bits)

3pqdB / P13714 Crystal structure of l-lactate dehydrogenase from bacillus subtilis complexed with fbp and NAD+
    42% identity, 96% coverage of query (249 bits)

A0A2U9AUU1 L-lactate dehydrogenase (EC 1.1.1.27) from Lacticaseibacillus casei (see paper)
    40% identity, 97% coverage of query (244 bits)

P00345 L-lactate dehydrogenase (EC 1.1.1.27) from Priestia megaterium (see paper)
    39% identity, 98% coverage of query (244 bits)

ldh / P00343 L-lactate dehydrogenase subunit (EC 1.1.1.27) from Lactobacillus casei (see 2 papers)
LDH_LACCA / P00343 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lacticaseibacillus casei (Lactobacillus casei) (see 3 papers)
    40% identity, 96% coverage of query (243 bits)

3wswA / V5XPB8 Crystal structure of minor l-lactate dehydrogenase from enterococcus mundtii in the ligands-bound form (see paper)
    40% identity, 97% coverage of query (243 bits)

6j9tB Complex structure of lactobacillus casei lactate dehydrogenase with fructose-1,6-bisphosphate
    40% identity, 96% coverage of query (243 bits)

1ldnA / P00344 Structure of a ternary complex of an allosteric lactate dehydrogenase from bacillus stearothermophilus at 2.5 angstroms resolution (see paper)
    39% identity, 99% coverage of query (242 bits)

LDH_GEOSE / P00344 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see 3 papers)
    39% identity, 99% coverage of query (242 bits)

1llcA / P00343 Structure determination of the allosteric l-lactate dehydrogenase from lactobacillus casei at 3.0 angstroms resolution
    39% identity, 96% coverage of query (238 bits)

LDH_LACHE / O32765 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactobacillus helveticus (Lactobacillus suntoryeus) (see paper)
    39% identity, 94% coverage of query (235 bits)

ldhA L-lactate dehydrogenase 1; EC 1.1.1.27 from Lactococcus lactis subsp. lactis (see paper)
    41% identity, 98% coverage of query (235 bits)

ldh / AAA99896.1 L-lactate:NAD+ oxidoreductase from Lactococcus lactis (see 2 papers)
ldh / AAA25172.1 lactate dehydrogenase from Lactococcus lactis (see paper)
    41% identity, 98% coverage of query (235 bits)

A0A1A6GB48 L-lactate dehydrogenase (EC 1.1.1.27) from Enterococcus mundtii (see paper)
    40% identity, 93% coverage of query (234 bits)

Q5FMB0 L-lactate dehydrogenase (EC 1.1.1.27) from Lactobacillus acidophilus (see paper)
    38% identity, 97% coverage of query (231 bits)

3pqdD Crystal structure of l-lactate dehydrogenase from bacillus subtilis complexed with fbp and NAD+
    40% identity, 96% coverage of query (231 bits)

6j9uA Complex structure of lactobacillus casei lactate dehydrogenase penta mutant with pyruvate
    40% identity, 96% coverage of query (231 bits)

LDH_PEDAC / Q59645 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Pediococcus acidilactici (see paper)
    37% identity, 96% coverage of query (224 bits)

P59390 L-lactate dehydrogenase (EC 1.1.1.27) from Lactiplantibacillus plantarum (see paper)
    40% identity, 96% coverage of query (224 bits)

ldh1 L-lactate dehydrogenase 1; EC 1.1.1.27 from Lactobacillus plantarum (see paper)
    37% identity, 96% coverage of query (223 bits)

Q8CMZ0 L-lactate dehydrogenase (EC 1.1.1.27) from Staphylococcus epidermidis (see paper)
    35% identity, 98% coverage of query (222 bits)

LDH_LACPE / P56511 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactiplantibacillus pentosus (Lactobacillus pentosus) (see 2 papers)
ldh L-lactate dehydrogenase; EC 1.1.1.27 from Lactobacillus pentosus (see paper)
    37% identity, 96% coverage of query (222 bits)

1ez4B / P56511 Crystal structure of non-allosteric l-lactate dehydrogenase from lactobacillus pentosus at 2.3 angstrom resolution (see paper)
    37% identity, 96% coverage of query (222 bits)

2ldbA Structure determination and refinement of bacillus stearothermophilus lactate dehydrogenase
    37% identity, 99% coverage of query (222 bits)

LDH2_STAAE / A6QK89 L-lactate dehydrogenase 2; L-LDH 2; EC 1.1.1.27 from Staphylococcus aureus (strain Newman) (see paper)
LDH2_STAAC / Q5HCV0 L-lactate dehydrogenase 2; L-LDH 2; EC 1.1.1.27 from Staphylococcus aureus (strain COL) (see paper)
    37% identity, 98% coverage of query (219 bits)

LDH_STRPN / P0A3M9 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (see paper)
LDH_STRP2 / Q04K99 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
    39% identity, 97% coverage of query (219 bits)

ldh / P26283 L-lactate dehydrogenase subunit (EC 1.1.1.27) from Streptococcus mutans serotype c (strain ATCC 700610 / UA159) (see 4 papers)
P26283 L-lactate dehydrogenase (EC 1.1.1.27) from Streptococcus mutans serotype c (see paper)
    40% identity, 97% coverage of query (218 bits)

1ldbA / P00344 Structure determination and refinement of bacillus stearothermophilus lactate dehydrogenase (see paper)
    37% identity, 99% coverage of query (217 bits)

B9MKZ8 L-lactate dehydrogenase (EC 1.1.1.27) from Caldicellulosiruptor bescii (see paper)
    36% identity, 99% coverage of query (212 bits)

B1A4R6 L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacter ethanolicus (see paper)
    36% identity, 98% coverage of query (201 bits)

E7CXT1 L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacterium saccharolyticum (see paper)
    35% identity, 98% coverage of query (197 bits)

LDH_THET8 / Q5SJA1 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 2 papers)
2e37C / Q5SJA1 Structure of tt0471 protein from thermus thermophilus
    37% identity, 96% coverage of query (192 bits)

LDH_THEAQ / P13715 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus aquaticus (see paper)
    36% identity, 98% coverage of query (192 bits)

LDH_THECA / P06150 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus caldophilus (see 3 papers)
    36% identity, 96% coverage of query (189 bits)

3vphA L-lactate dehydrogenase from thermus caldophilus gk24 complexed with oxamate, nadh and fbp
    36% identity, 96% coverage of query (189 bits)

ldh2 / E8ME30 L-lactate dehydrogenase subunit (EC 1.1.1.27) from Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) (see 2 papers)
LDH2_BIFL2 / E8ME30 L-lactate dehydrogenase 2; L-LDH 2; FBP-dependent LDH; EC 1.1.1.27 from Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) (see 2 papers)
    31% identity, 99% coverage of query (187 bits)

1lldA / E8ME30 Molecular basis of allosteric activation of bacterial l-lactate dehydrogenase (see paper)
    31% identity, 98% coverage of query (186 bits)

1lthR T and r states in the crystals of bacterial l-lactate dehydrogenase reveal the mechanism for allosteric control
    31% identity, 98% coverage of query (186 bits)

3zznA 5-mutant (r79w, r151a, e279a, e299a,e313a) lactate-dehydrogenase from thermus thermophillus
    36% identity, 96% coverage of query (185 bits)

2xxbA Penta-mutant of thermus thermophilus lactate dehydrogenase, complex with amp
    36% identity, 96% coverage of query (185 bits)

6h9sB / A9BGZ9 Crystal dimeric structure of petrotoga mobilis lactate dehydrogenase with nadh
    35% identity, 96% coverage of query (181 bits)

LDH_SELRU / Q9EVR0 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Selenomonas ruminantium (see paper)
    31% identity, 99% coverage of query (176 bits)

7nayA / Q9EVR0 Crystal structure of lactate dehydrogenase from selenomonas ruminantium with nadh.
    31% identity, 99% coverage of query (176 bits)

8ab3A / K9Z684 Crystal structure of the lactate dehydrogenase of cyanobacterium aponinum in complex with oxamate, nadh and fbp. (see paper)
    32% identity, 97% coverage of query (174 bits)

DHL2_WEICO / P14295 L-2-hydroxyisocaproate dehydrogenase; L-HicDH; EC 1.1.1.- from Weissella confusa (Lactobacillus confusus) (see paper)
P14295 L-2-hydroxycarboxylate dehydrogenase (NAD+) (EC 1.1.1.337) from Weissella confusa (see 6 papers)
    34% identity, 96% coverage of query (172 bits)

1a5zA / P16115 Lactate dehydrogenase from thermotoga maritima (tmldh) (see paper)
    35% identity, 97% coverage of query (171 bits)

ldhA / AAF74436.1 lactate dehydrogenase from Rhizopus oryzae (see paper)
    35% identity, 96% coverage of query (171 bits)

LDH_THEMA / P16115 L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see 2 papers)
    34% identity, 97% coverage of query (170 bits)

7f8dA / A0A143T1U9 Malate dehydrogenase from geobacillus stearothermophilus (gs-mdh) g218y mutant (see paper)
    34% identity, 98% coverage of query (169 bits)

1hyhA / P14295 Crystal structure of l-2-hydroxyisocaproate dehydrogenase from lactobacillus confusus at 2.2 angstroms resolution-an example of strong asymmetry between subunits (see paper)
    34% identity, 96% coverage of query (169 bits)

LDH6A_HUMAN / Q6ZMR3 L-lactate dehydrogenase A-like 6A; LDHA-like protein 6A; EC 1.1.1.27 from Homo sapiens (Human) (see paper)
    30% identity, 96% coverage of query (166 bits)

ldh / P78007 L-lactate dehydrogenase (EC 1.1.1.27) from Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) (see 5 papers)
    30% identity, 98% coverage of query (164 bits)

MDH_CHLTE / P80039 Malate dehydrogenase; EC 1.1.1.37 from Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum) (see paper)
    33% identity, 96% coverage of query (164 bits)

7byaA Malate dehydrogenase from geobacillus stearothermophilus (gs-mdh) complexed with oxaloacetic acid (oaa) and adenosine 5'- diphosphoribose (apr)
    34% identity, 97% coverage of query (164 bits)

7by9A Malate dehydrogenase from geobacillus stearothermophilus (gs-mdh) complexed with oxaloacetic acid (oaa) and nicotinamide adenine dinucleotide (NAD)
    34% identity, 97% coverage of query (164 bits)

1guzA / P0C890,P80039 Structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases (see paper)
    33% identity, 96% coverage of query (163 bits)

MDH_PROVB / P0C890 Malate dehydrogenase; EC 1.1.1.37 from Prosthecochloris vibrioformis (Chlorobium vibrioforme) (see paper)
    32% identity, 98% coverage of query (160 bits)

P49814 Malate dehydrogenase; Vegetative protein 69; VEG69; EC 1.1.1.37 from Bacillus subtilis (strain 168)
    33% identity, 98% coverage of query (159 bits)

1gv0A / P80039 Structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases (see paper)
    32% identity, 96% coverage of query (156 bits)

Build an alignment

Build an alignment for BWI76_RS15220 and 64 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

LDHB_PIG / P00336 L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; EC 1.1.1.27 from Sus scrofa (Pig) (see paper)
P00336 L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa (see paper)
    28% identity, 96% coverage of query (153 bits)

LDHC_MOUSE / P00342 L-lactate dehydrogenase C chain; LDH-C; LDH testis subunit; LDH-X; EC 1.1.1.27 from Mus musculus (Mouse) (see paper)
    29% identity, 92% coverage of query (153 bits)

5ytaA Pig heart lactate dehydrogenase in complex with nadh and oxamate
    28% identity, 96% coverage of query (153 bits)

6k13A / I7J7V6 Crystal structure basis for bmldh complex (see paper)
    26% identity, 96% coverage of query (152 bits)

LDHB_HUMAN / P07195 L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; Renal carcinoma antigen NY-REN-46; EC 1.1.1.27 from Homo sapiens (Human) (see 11 papers)
    28% identity, 96% coverage of query (152 bits)

7dbjA / P07195 Crystal structure of human ldhb in complex with nadh, oxamate, and axko-0046 (see paper)
    28% identity, 96% coverage of query (152 bits)

5ldhA Structure of the active ternary complex of pig heart lactate dehydrogenase with s-lac-NAD at 2.7 angstroms resolution
    28% identity, 96% coverage of query (152 bits)

6sbuA X-ray structure of human ldha with an allosteric inhibitor (compound 3)
    26% identity, 97% coverage of query (152 bits)

1t2fA Human b lactate dehydrogenase complexed with NAD+ and 4-hydroxy-1,2,5- oxadiazole-3-carboxylic acid
    28% identity, 96% coverage of query (152 bits)

5nqqC Rabbit muscle l-lactate dehydrogenase in complex with nadh and oxaloacetate
    27% identity, 96% coverage of query (152 bits)

6sbvA X-ray structure of human ldh-a with an allosteric inhibitor (compound 7)
    26% identity, 97% coverage of query (152 bits)

5w8jA Crystal structure of lactate dehydrogenase a in complex with inhibitor compound 29
    26% identity, 97% coverage of query (152 bits)

5w8iA Crystal structure of lactate dehydrogenase a in complex with inhibitor compound 23 and zinc
    26% identity, 97% coverage of query (152 bits)

8fw6A Human lactate dehydrogenase a in complex with inhibitor chk-336
    26% identity, 97% coverage of query (152 bits)

6q13A Crystal structure of ldha in complex with compound ncgc00420737-09 at 2.00 a resolution
    26% identity, 97% coverage of query (152 bits)

6q0dA Crystal structure of ldha in complex with compound ncgc00384414-01 at 2.05 a resolution
    26% identity, 97% coverage of query (152 bits)

6bb3A Lactate dehydrogenase in complex with inhibitor 3-((2-chlorophenyl) thio)-6-(6-((4-fluorophenyl)amino)pyridin-2-yl)-4-hydroxy-6- (thiophen-3-yl)-5,6-dihydro-2h-pyran-2-one
    26% identity, 97% coverage of query (152 bits)

6badA Lactate dehydrogenase in complex with inhibitor (r)-3-((2- chlorophenyl)thio)-6-(3-((4-fluorophenyl)amino)phenyl)-4-hydroxy-6- (thiophen-3-yl)-5,6-dihydro-2h-pyran-2-one
    26% identity, 97% coverage of query (152 bits)

5zjfA Ldha-ma
    26% identity, 97% coverage of query (152 bits)

5w8lA Crystal structure of lactate dehydrogenase a in complex with inhibitor compound 59 and nadh
    26% identity, 97% coverage of query (152 bits)

5w8hA Crystal structure of lactate dehydrogenase a in complex with inhibitor compound 11
    26% identity, 97% coverage of query (152 bits)

5ixyA Lactate dehydrogenase in complex with hydroxylactam inhibitor compound 31: (2~{s})-5-(2-chlorophenyl)sulfanyl-2-(4-morpholin-4-ylphenyl)-4- oxidanyl-2-thiophen-3-yl-1,3-dihydropyridin-6-one
    26% identity, 97% coverage of query (152 bits)

4zvvA Lactate dehydrogenase a in complex with a trisubstituted piperidine-2, 4-dione inhibitor gne-140
    26% identity, 97% coverage of query (152 bits)

4r68A Lactate dehydrogenase in complex with inhibitor compound 31
    26% identity, 97% coverage of query (152 bits)

4qo8A Lactate dehydrogenase a in complex with substituted 3-hydroxy-2- mercaptocyclohex-2-enone compound 104
    26% identity, 97% coverage of query (152 bits)

4qo7A Lactate dehydrogenase a in complex with substituted 3-hydroxy-2- mercaptocyclohex-2-enone compound 7
    26% identity, 97% coverage of query (152 bits)

4oknB Crystal structure of human muscle l-lactate dehydrogenase, ternary complex with nadh and oxalate
    26% identity, 97% coverage of query (152 bits)

4oknA Crystal structure of human muscle l-lactate dehydrogenase, ternary complex with nadh and oxalate
    26% identity, 97% coverage of query (152 bits)

4m49A Lactate dehydrogenase a in complex with a substituted pyrazine inhibitor compound 18
    26% identity, 97% coverage of query (152 bits)

1i10A Human muscle l-lactate dehydrogenase m chain, ternary complex with nadh and oxamate
    26% identity, 97% coverage of query (152 bits)

4qsmA / P00338 Crystal structure of human muscle l-lactate dehydrogenase in complex with inhibitor 2, 3-{[7-(2,4-dimethoxypyrimidin-5-yl)-3- sulfamoylquinolin-4-yl]amino}benzoic acid (see paper)
    26% identity, 97% coverage of query (151 bits)

LDHA_RABIT / P13491 L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Oryctolagus cuniculus (Rabbit) (see paper)
P13491 L-lactate dehydrogenase (EC 1.1.1.27) from Oryctolagus cuniculus (see 2 papers)
    27% identity, 96% coverage of query (151 bits)

Ldha / P04642 lactate dehydrogenase subunit (EC 1.1.1.27) from Rattus norvegicus (see 3 papers)
    26% identity, 96% coverage of query (151 bits)

LDHA_HUMAN / P00338 L-lactate dehydrogenase A chain; LDH-A; Cell proliferation-inducing gene 19 protein; LDH muscle subunit; LDH-M; Renal carcinoma antigen NY-REN-59; EC 1.1.1.27 from Homo sapiens (Human) (see 5 papers)
P00338 L-lactate dehydrogenase (EC 1.1.1.27) from Homo sapiens (see 3 papers)
    26% identity, 97% coverage of query (151 bits)

B7XH73 L-lactate dehydrogenase (EC 1.1.1.27) from Equus caballus (see paper)
    27% identity, 96% coverage of query (151 bits)

Q5E9B1 L-lactate dehydrogenase (EC 1.1.1.27) from Bos taurus (see paper)
    28% identity, 95% coverage of query (151 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory