Sites on a Tree

 

Searching for up to 100 curated homologs for BWI76_RS26320 FitnessBrowser__Koxy:BWI76_RS26320 (436 a.a.)

Found high-coverage hits (≥70%) to 18 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

YfaV / b2246 putative transporter YfaV from Escherichia coli K-12 substr. MG1655 (see 4 papers)
TC 2.A.1.14.35 / P76470 Inner membrane transport protein RhmT from Escherichia coli (strain K12) (see 4 papers)
    52% identity, 97% coverage of query (461 bits)

PS417_07265 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae WCS417
    39% identity, 92% coverage of query (265 bits)

BWI76_RS23715 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis M5al
    39% identity, 95% coverage of query (263 bits)

ABAQ_ACIBT / P0DPR4 Quinolone resistance transporter from Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) (see 2 papers)
    35% identity, 94% coverage of query (257 bits)

BPHYT_RS04765 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans PsJN
    32% identity, 92% coverage of query (211 bits)

TC 2.A.1.14.8 / Q9RPP3 Phthalate porter from Burkholderia cepacia (Pseudomonas cepacia) (see paper)
    34% identity, 92% coverage of query (209 bits)

H281DRAFT_00642 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila 376MFSha3.1
    34% identity, 94% coverage of query (207 bits)

NICT_PSEPK / Q88FY6 Putative metabolite transport protein NicT; Nicotinate degradation protein T from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
    33% identity, 95% coverage of query (201 bits)

orf19.3232 putative transporter from Candida albicans (see paper)
    30% identity, 71% coverage of query (151 bits)

Build an alignment

Build an alignment for BWI76_RS26320 and 9 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

CH_124029 high-affinity nicotinic acid transporter from Magnaporthe grisea 70-15 (see paper)
    28% identity, 77% coverage of query (132 bits)

CH_124319 high-affinity nicotinic acid transporter from Magnaporthe grisea 70-15 (see paper)
    27% identity, 71% coverage of query (124 bits)

TNA1 putative nicotinic acid transporter from Candida albicans (see paper)
    26% identity, 81% coverage of query (123 bits)

CNSO_PENEN / A0A0A2IBP6 MFS-type transporter cnsO; Communesin biosynthesis cluster protein O from Penicillium expansum (Blue mold rot fungus) (see paper)
    27% identity, 80% coverage of query (107 bits)

CH_124204 putative monocarboxylate exporter from Magnaporthe grisea 70-15 (see paper)
    24% identity, 86% coverage of query (105 bits)

orf19.2397.3 putative uncharacterized protein VHT1 from Candida albicans (see paper)
    22% identity, 82% coverage of query (104 bits)

YGDF_SCHPO / O94572 Uncharacterized transporter C1773.15 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    22% identity, 78% coverage of query (79.7 bits)

LgoT / b4356 galactonate:H+ symporter from Escherichia coli K-12 substr. MG1655 (see 2 papers)
lgoT / P39398 galactonate:H+ symporter from Escherichia coli (strain K12) (see 2 papers)
LGOT_ECOLI / P39398 Probable L-galactonate transporter; Galactonate:H(+) symporter from Escherichia coli (strain K12) (see 2 papers)
yjjL / RF|NP_418776 inner membrane transport protein yjjL from Escherichia coli K12 (see 2 papers)
    22% identity, 91% coverage of query (79.3 bits)

PFMAC_PESFW / W3X9K4 MFS transporter PfmaC; Conidial pigment biosynthesis cluster protein B from Pestalotiopsis fici (strain W106-1 / CGMCC3.15140) (see paper)
    25% identity, 70% coverage of query (73.9 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory