Sites on a Tree

 

Searching for up to 100 curated homologs for CA265_RS04025 FitnessBrowser__Pedo557:CA265_RS04025 (1054 a.a.)

Found high-coverage hits (≥70%) to 79 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

AAX48919.1 β-galactosidase (Gal4214-1) (EC 3.2.1.23) (see protein)
    41% identity, 100% coverage of query (796 bits)

3bgaA / Q8A799 Crystal structure of beta-galactosidase from bacteroides thetaiotaomicron vpi-5482
    40% identity, 98% coverage of query (721 bits)

AAD36268.1 β-galactosidase Z (LacZ;TmLac;TM1193) (EC 3.2.1.23) (see protein)
    37% identity, 98% coverage of query (689 bits)

6s6zA / Q56307 Structure of beta-galactosidase from thermotoga maritima (see paper)
    37% identity, 98% coverage of query (687 bits)

AAC24219.1 β-galactosidase (BgalB) (EC 3.2.1.23) (see protein)
    37% identity, 94% coverage of query (677 bits)

ABN13675.1 β-galactosidase (EC 3.2.1.23) (see protein)
    38% identity, 97% coverage of query (672 bits)

ACO52514.1 β-galactosidase (partial) (EC 3.2.1.23) (see protein)
    37% identity, 97% coverage of query (672 bits)

CAA04267.1 β-galactosidase (BgaM) (EC 3.2.1.23) (see protein)
bgaM / CAA04267.1 beta-galactosidase from Bacillus megaterium (see paper)
    38% identity, 97% coverage of query (667 bits)

O85167 beta-galactosidase (EC 3.2.1.23) from Priestia megaterium (see paper)
    37% identity, 97% coverage of query (634 bits)

BAA76741.1 β-galactosidase Z (LacZ) (EC 3.2.1.23) (see protein)
    35% identity, 97% coverage of query (621 bits)

CAC50563.1 β-galactosidase (Lac;OLGA313) (EC 3.2.1.23) (see protein)
    34% identity, 97% coverage of query (603 bits)

AAR92204.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    34% identity, 97% coverage of query (585 bits)

AAK15465.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    35% identity, 97% coverage of query (581 bits)

BGAL_PSEHA / P81650 Beta-galactosidase; Beta-gal; Beta-D-galactoside galactohydrolase; Lactase; EC 3.2.1.23 from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) (see paper)
P81650 beta-galactosidase (EC 3.2.1.23) from Pseudoalteromonas haloplanktis (see paper)
CAA10470.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    34% identity, 97% coverage of query (577 bits)

BGAL_ENTAG / A3FEW8 Beta-galactosidase; Beta-gal; Bga; Lactase; Transglycosylating beta-galactosidase; EC 3.2.1.23 from Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans) (see paper)
    33% identity, 98% coverage of query (545 bits)

ABN42680.1 β-galactosidase (EC 3.2.1.23) (see protein)
    33% identity, 98% coverage of query (545 bits)

ABB73039.1 β-galactosidase (Bga;BgaB5) (EC 3.2.1.23) (see protein)
    32% identity, 98% coverage of query (536 bits)

LacZ / b0344 β-galactosidase (EC 3.2.1.108) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
lacZ / P00722 β-galactosidase (EC 3.2.1.108) from Escherichia coli (strain K12) (see 41 papers)
BGAL_ECOLI / P00722 Beta-galactosidase; Beta-gal; Lactase; EC 3.2.1.23 from Escherichia coli (strain K12) (see 10 papers)
AAA24053.1 β-galactosidase Z (LacZ;Lac-Z;b0344;EO53_16565) (EC 3.2.1.23) (see protein)
ACX40886.1 β-galactosidase (LacZ;EcDH1_3262) (EC 3.2.1.23) (see protein)
BAE76126.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    33% identity, 97% coverage of query (531 bits)

CAC87491.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    33% identity, 97% coverage of query (531 bits)

6tshA Beta-galactosidase in complex with deoxygalacto-nojirimycin
    33% identity, 97% coverage of query (531 bits)

5a1aA 2.2 a resolution cryo-em structure of beta-galactosidase in complex with a cell-permeant inhibitor
    33% identity, 97% coverage of query (531 bits)

7btkC / P00722 E.Coli beta-galactosidase (e537q) in complex with fluorescent probe ksa01 (see paper)
    33% identity, 97% coverage of query (530 bits)

1jz6A E. Coli (lacz) beta-galactosidase in complex with galacto-tetrazole
    33% identity, 97% coverage of query (530 bits)

1jz5A E. Coli (lacz) beta-galactosidase in complex with d-galctopyranosyl-1- on
    33% identity, 97% coverage of query (530 bits)

1jz3A E. Coli (lacz) beta-galactosidase-trapped 2-deoxy-galactosyl enzyme intermediate
    33% identity, 97% coverage of query (530 bits)

1jz2A E. Coli (lacz) beta-galactosidase-trapped 2-f-galactosyl-enzyme intermediate (orthorhombic)
    33% identity, 97% coverage of query (530 bits)

1jyxA E. Coli (lacz) beta-galactosidase in complex with iptg
    33% identity, 97% coverage of query (530 bits)

7brsA E.Coli beta-galactosidase (e537q) in complex with fluorescent probe ksa02
    33% identity, 97% coverage of query (530 bits)

6kuzA E.Coli beta-galactosidase (e537q) in complex with fluorescent probe ksl01
    33% identity, 97% coverage of query (530 bits)

1jywA E. Coli (lacz) beta-galactosidase (e537q) in complex with pnpg
    33% identity, 97% coverage of query (529 bits)

1jyvA E. Coli (lacz) beta-galactosidase (e537q) in complex with onpg
    33% identity, 97% coverage of query (529 bits)

1jynA E. Coli (lacz) beta-galactosidase (e537q) in complex with lactose
    33% identity, 97% coverage of query (529 bits)

4duxA E. Coli (lacz) beta-galactosidase (n460s) in complex with l-ribose
    33% identity, 97% coverage of query (529 bits)

ADM36015.1 intracellular β-galactosidase (BgaD) (EC 3.2.1.23) (see protein)
    32% identity, 96% coverage of query (526 bits)

AMK07416.1 β-galactosidase (BglP) (EC 3.2.1.23) (see protein)
    33% identity, 93% coverage of query (523 bits)

BAA07673.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    32% identity, 98% coverage of query (518 bits)

AAA26913.1 β-galactosidase Z (LacZ) (EC 3.2.1.23) (see protein)
ABJ66539.1 β-galactosidase (STER_1366) (EC 3.2.1.23) (see protein)
    33% identity, 97% coverage of query (513 bits)

AMK07522.1 β-galactosidase (GalB) (EC 3.2.1.23) (see protein)
    33% identity, 97% coverage of query (510 bits)

CAZ66940.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    33% identity, 97% coverage of query (510 bits)

AEA30145.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    31% identity, 98% coverage of query (503 bits)

EbgA / b3076 evolved β-D-galactosidase subunit α from Escherichia coli K-12 substr. MG1655 (see 2 papers)
BGA2_ECOLI / P06864 Evolved beta-galactosidase subunit alpha; Beta-gal; Lactase; EC 3.2.1.23 from Escherichia coli (strain K12) (see paper)
    31% identity, 97% coverage of query (503 bits)

AAA61971.1 evolved β-galactosidase (EbgA;b3076) (EC 3.2.1.23) (see protein)
    31% identity, 97% coverage of query (493 bits)

AAZ81660.1 β-1,4-galactosidase (EC 3.2.1.23) (see protein)
    32% identity, 95% coverage of query (489 bits)

ACE06986.1 β-galactosidase (BgaL3) (EC 3.2.1.23) (see protein)
    33% identity, 95% coverage of query (487 bits)

Q1G9Z4 beta-galactosidase (EC 3.2.1.23) from Lactobacillus delbrueckii (see paper)
CAI98003.1 β-galactosidase Z (LacZ;Lbul?gal;Ldb1201) (EC 3.2.1.23) (see protein)
    33% identity, 95% coverage of query (485 bits)

AAA25082.1 β-galactosidase Z (LacZ) (EC 3.2.1.23) (see protein)
    32% identity, 90% coverage of query (485 bits)

AAA23216.1 β-galactosidase (EC 3.2.1.23) (see protein)
    34% identity, 87% coverage of query (485 bits)

CAC90476.1 β-galactosidase (LacZ;YPO1654) (EC 3.2.1.23) (see protein)
    32% identity, 97% coverage of query (484 bits)

AAA25240.1 β-galactosidase Z (EC 3.2.1.23) (see protein)
    33% identity, 95% coverage of query (481 bits)

AAD11504.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    33% identity, 97% coverage of query (476 bits)

CAB44428.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    32% identity, 96% coverage of query (474 bits)

AAK06078.1 β-galactosidase (LacZ;L0025) (EC 3.2.1.23) (see protein)
    33% identity, 97% coverage of query (474 bits)

AAN24786.1 β-galactosidase (LacZ;BL0978) (EC 3.2.1.23) (see protein)
    32% identity, 96% coverage of query (472 bits)

ACJ53392.1 β-galactosidase 2A (Blon_2334) (Bga2A) (EC 3.2.1.23) (see protein)
    32% identity, 96% coverage of query (471 bits)

AAL02052.1 β-galactosidase I (β-GalI) (EC 3.2.1.23) (see protein)
    32% identity, 96% coverage of query (465 bits)

AAA69907.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    30% identity, 92% coverage of query (446 bits)

Build an alignment

Build an alignment for CA265_RS04025 and 56 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

ABE96223.1 β-galactosidase (LacZ;Lacz6;Bbr_1552_lacZ;Bbr_1552 (EC 3.2.1.23) (see protein)
    29% identity, 96% coverage of query (444 bits)

BGAC_BIFAA / A1A3T0 Beta-galactosidase BgaC; Beta-gal; Lactase; EC 3.2.1.23 from Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) (see paper)
    31% identity, 96% coverage of query (444 bits)

AAB17954.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    30% identity, 96% coverage of query (435 bits)

ABE00939.1 β-galactosidase K2 (BbgIV) (EC 3.2.1.23) (see protein)
ABE00939.1 bbgIV beta-galactosidase from Bifidobacterium bifidum NCIMB 41171 (see paper)
    29% identity, 96% coverage of query (432 bits)

CAC14565.1 β-galactosidase (BIF2) (EC 3.2.1.23) (see protein)
    29% identity, 96% coverage of query (431 bits)

ACI41243.1 β-galactosidase (BgaS) (EC 3.2.1.23) (see protein)
    30% identity, 91% coverage of query (429 bits)

bbgIV / BAI94827.1 beta-galactosidase from Bifidobacterium bifidum (see paper)
    29% identity, 96% coverage of query (426 bits)

1yq2A / Q8KRF6 Beta-galactosidase from arthrobacter sp. C2-2 (isoenzyme c2-2-1) (see paper)
    30% identity, 92% coverage of query (425 bits)

Q08KN3 beta-galactosidase (EC 3.2.1.23) from Arthrobacter psychrolactophilus (see paper)
BAF33372.1 β-galactosidase (BglA) (EC 3.2.1.23) (see protein)
    30% identity, 92% coverage of query (424 bits)

CAD29775.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    30% identity, 92% coverage of query (424 bits)

Q7WTU5 beta-galactosidase (EC 3.2.1.23) from Arthrobacter sp. (see paper)
AAQ19029.1 β-galactosidase (LacZ) (EC 3.2.1.23) (see protein)
    30% identity, 91% coverage of query (418 bits)

D9IU58 beta-galactosidase (EC 3.2.1.23) from Arthrobacter sp. (see paper)
ADJ18283.1 β-galactosidase (GalA) (EC 3.2.1.23) (see protein)
    30% identity, 92% coverage of query (418 bits)

AAU37413.1 β-galactosidase (BgaA;MsBgaA;MS0806) (EC 3.2.1.23) (see protein)
    29% identity, 97% coverage of query (412 bits)

3ob8A / P00723 Structure of the beta-galactosidase from kluyveromyces lactis in complex with galactose (see paper)
    29% identity, 97% coverage of query (405 bits)

Q6QTF4 beta-galactosidase (EC 3.2.1.23) from Kluyveromyces marxianus (see paper)
AAS18310.1 β-galactosidase (EC 3.2.1.23) (see protein)
    29% identity, 97% coverage of query (405 bits)

P00723 beta-galactosidase (EC 3.2.1.23) from Kluyveromyces lactis (see paper)
AAA35265.1 β-galactosidase (Lac4;BgaL) (EC 3.2.1.23) (see protein)
AHW49176.1 β-galactosidase (BglKL) (EC 3.2.1.23) (see protein)
CAH02587.1 β-galactosidase (BgaL;KLLA0B14883g) (EC 3.2.1.23) (see protein)
    29% identity, 97% coverage of query (405 bits)

3obaA Structure of the beta-galactosidase from kluyveromyces lactis
    29% identity, 97% coverage of query (405 bits)

6secA Cold-adapted beta-d-galactosidase from arthrobacter sp. 32cbon complex with onpg
    28% identity, 94% coverage of query (388 bits)

6se9A / A0A023UGN9 Cold-adapted beta-d-galactosidase from arthrobacter sp. 32cb mutant e441q in complex with lactose bound in shallow mode (see paper)
    28% identity, 94% coverage of query (387 bits)

6sebA Cold-adapted beta-d-galactosidase from arthrobacter sp. 32cb in complex with iptg
    28% identity, 94% coverage of query (387 bits)

6seaA Cold-adapted beta-d-galactosidase from arthrobacter sp. 32cb mutant e441q in complex with lactose bound in deep mode
    28% identity, 94% coverage of query (387 bits)

CAA74937.1 β-galactosidase (LacH) (EC 3.2.1.23) (see protein)
lacH / CAA74937.1 beta-D-galactosidase from Staphylococcus xylosus (see paper)
    30% identity, 97% coverage of query (386 bits)

6zjuA Cold-adapted beta-d-galactosidase from arthrobacter sp. 32cb mutant e441q in complex with saccharose
    28% identity, 94% coverage of query (386 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory