Sites on a Tree

 

Searching for up to 100 curated homologs for CA265_RS04210 FitnessBrowser__Pedo557:CA265_RS04210 (149 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SM_b21108 L-fucose mutarotase (EC 5.1.3.29) from Sinorhizobium meliloti 1021
    55% identity, 74% coverage of query (127 bits)

7bywA / F0Q4R9 Crystal structure of acidovorax avenae l-fucose mutarotase (l-fucose- bound form) (see paper)
    50% identity, 74% coverage of query (115 bits)

Build an alignment

Build an alignment for CA265_RS04210 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

YiiL / b3901 L-rhamnose mutarotase (EC 5.1.3.32) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
rhaM / P32156 L-rhamnose mutarotase (EC 5.1.3.32) from Escherichia coli (strain K12) (see 2 papers)
RHAM_ECOLI / P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12) (see 2 papers)
P32156 L-rhamnose mutarotase (EC 5.1.3.32) from Escherichia coli (see 2 papers)
1x8dA / P32156 Crystal structure of e. Coli yiil protein containing l-rhamnose (see paper)
rhaM / RF|NP_418337 L-rhamnose mutarotase; EC 5.1.3.n3 from Escherichia coli K12 (see 6 papers)
    25% identity, 74% coverage of query (41.2 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory