Sites on a Tree

 

Searching for up to 100 curated homologs for CA265_RS08625 FitnessBrowser__Pedo557:CA265_RS08625 (566 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

Removed hits that are identical to the query, leaving 10

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Echvi_0515 Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis KMM 6221, DSM 17526
    57% identity, 97% coverage of query (649 bits)

AraB / b0063 ribulokinase (EC 2.7.1.16) from Escherichia coli K-12 substr. MG1655 (see 7 papers)
araB / P08204 ribulokinase (EC 2.7.1.16) from Escherichia coli (strain K12) (see 7 papers)
ARAB_ECOLI / P08204 Ribulokinase; EC 2.7.1.16 from Escherichia coli (strain K12) (see 2 papers)
araB ribulokinase; EC 2.7.1.16 from Escherichia coli (see 3 papers)
    49% identity, 97% coverage of query (541 bits)

ARAB_BACSU / P94524 Ribulokinase; EC 2.7.1.16 from Bacillus subtilis (strain 168) (see paper)
    35% identity, 98% coverage of query (303 bits)

Q9KBQ3 ribulokinase (EC 2.7.1.16) from Alkalihalobacillus halodurans (see paper)
    36% identity, 97% coverage of query (302 bits)

3qdkA / Q9KBQ3 Structural insight on mechanism and diverse substrate selection strategy of ribulokinase (see paper)
    36% identity, 97% coverage of query (299 bits)

Build an alignment

Build an alignment for CA265_RS08625 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

FGGY / Q96C11 FGGY carbohydrate kinase domain-containing protein (EC 2.7.1.47) from Homo sapiens (see paper)
FGGY_HUMAN / Q96C11 FGGY carbohydrate kinase domain-containing protein; D-ribulokinase FGGY; EC 2.7.1.47 from Homo sapiens (Human) (see 2 papers)
Q96C11 D-ribulokinase (EC 2.7.1.47) from Homo sapiens (see paper)
    26% identity, 98% coverage of query (123 bits)

3l0qA / Q665C6 The crystal structure of xlylulose kinase from yersinia pseudotuberculosis
    27% identity, 97% coverage of query (114 bits)

YDR109C / Q04585 D-ribulokinase (EC 2.7.1.47) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 2 papers)
YDR09_YEAST / Q04585 D-ribulokinase YDR109C; EC 2.7.1.47 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
Q04585 D-ribulokinase (EC 2.7.1.47) from Saccharomyces cerevisiae (see paper)
    24% identity, 89% coverage of query (89.7 bits)

XYLB_LEVBR / P35850 Xylulose kinase; Xylulokinase; EC 2.7.1.17 from Levilactobacillus brevis (Lactobacillus brevis) (see paper)
    24% identity, 98% coverage of query (78.2 bits)

mtlY / Q4KC52 xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) (see paper)
    20% identity, 87% coverage of query (52.4 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory