Sites on a Tree

 

Searching for up to 100 curated homologs for CA265_RS09870 FitnessBrowser__Pedo557:CA265_RS09870 (207 a.a.)

Found high-coverage hits (≥70%) to 35 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

5y6qA / Q84IY0 Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
    66% identity, 71% coverage of query (211 bits)

YagT / b0286 aldehyde dehydrogenase, Fe-S subunit (EC 1.2.99.6) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
paoA / P77165 aldehyde dehydrogenase, Fe-S subunit (EC 1.2.99.6) from Escherichia coli (strain K12) (see 5 papers)
PAOA_ECOLI / P77165 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA; EC 1.2.99.6 from Escherichia coli (strain K12) (see 5 papers)
P77165 xanthine dehydrogenase (subunit 3/3) (EC 1.17.1.4) from Escherichia coli (see paper)
yagT / MB|P77165 putative xanthine dehydrogenase yagT iron-sulfur-binding subunit from Escherichia coli K12 (see 3 papers)
    56% identity, 89% coverage of query (202 bits)

5g5gA / P77165 Escherichia coli periplasmic aldehyde oxidase (see paper)
    62% identity, 71% coverage of query (201 bits)

SSO2637 / Q97VI6 glycolaldehyde oxidoreductase small subunit from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (see paper)
    50% identity, 72% coverage of query (157 bits)

F9VNL5 glyceraldehyde dehydrogenase (FAD-containing) (subunit 1/3) (EC 1.2.99.8) from Sulfurisphaera tokodaii (see paper)
    48% identity, 71% coverage of query (152 bits)

4zohC / Q974V0 Crystal structure of glyceraldehyde oxidoreductase (see paper)
    50% identity, 71% coverage of query (146 bits)

Q974V0 glyceraldehyde dehydrogenase (FAD-containing) (subunit 1/3) (EC 1.2.99.8) from Sulfurisphaera tokodaii (see paper)
    50% identity, 71% coverage of query (145 bits)

1t3qA / P72223 Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86 (see paper)
    47% identity, 70% coverage of query (143 bits)

P72223 quinoline 2-oxidoreductase (subunit 2/3) (EC 1.3.99.17) from Pseudomonas putida (see paper)
    47% identity, 70% coverage of query (143 bits)

cutC / Q4J6M5 aldehyde dehydrogenase γ subunit (EC 1.2.99.8) from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (see paper)
CUTC_SULAC / Q4J6M5 Glyceraldehyde dehydrogenase small chain; Glyceraldehyde dehydrogenase subunit C; Glyceraldehyde dehydrogenase subunit gamma; EC 1.2.99.8 from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (see paper)
Q4J6M5 glyceraldehyde dehydrogenase (FAD-containing) (subunit 1/3) (EC 1.2.99.8) from Sulfolobus acidocaldarius (see paper)
    45% identity, 72% coverage of query (142 bits)

CDHC_PSEU3 / D7REY5 Caffeine dehydrogenase subunit gamma; Caffeine dehydrogenase small subunit; EC 1.17.5.2 from Pseudomonas sp. (strain CBB1) (see paper)
    48% identity, 71% coverage of query (138 bits)

ndhB / Q59128 NdhB (EC 1.5.99.4) from Paenarthrobacter nicotinovorans (see 2 papers)
Q59128 nicotine dehydrogenase (EC 1.5.99.4) from Paenarthrobacter nicotinovorans (see 2 papers)
AAK64244.1 ndhS from Paenarthrobacter nicotinovorans (see paper)
    42% identity, 72% coverage of query (137 bits)

hcrC / Q5P3F2 4-hydroxybenzoyl-CoA reductase, γ subunit (EC 1.1.7.1) from Aromatoleum aromaticum (strain EbN1) (see 3 papers)
    47% identity, 74% coverage of query (136 bits)

DCMS_AFIC5 / P19921 Carbon monoxide dehydrogenase small chain; CO dehydrogenase subunit S; CO-DH S; EC 1.2.5.3 from Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) (Oligotropha carboxidovorans) (see 3 papers)
P19921 aerobic carbon monoxide dehydrogenase (subunit 1/3) (EC 1.2.5.3); anaerobic carbon-monoxide dehydrogenase (subunit 1/3) (EC 1.2.7.4) from Afipia carboxidovorans (see 3 papers)
coxS / RF|YP_015604.1 carbon-monoxide dehydrogenase (acceptor), small subunit; EC 1.2.99.2 from Oligotropha carboxidovorans OM5 (see 5 papers)
    47% identity, 71% coverage of query (134 bits)

1n5wA / P19921 Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
    47% identity, 71% coverage of query (133 bits)

1n5wD Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form
    47% identity, 71% coverage of query (133 bits)

D5G1Y1 anaerobic carbon-monoxide dehydrogenase (subunit 1/3) (EC 1.2.7.4) from Mycobacterium sp. (see paper)
    43% identity, 70% coverage of query (132 bits)

XDHE_BACSU / O32143 Probable xanthine dehydrogenase subunit E; XDHase subunit E; EC 1.17.1.4 from Bacillus subtilis (strain 168) (see paper)
pucE / GB|CAB15237.1 xanthine dehydrogenase, subunit E; EC 1.17.1.4 from Bacillus subtilis (see paper)
    42% identity, 73% coverage of query (131 bits)

kdhB / O87682 ketone dehydrogenase small subunit (EC 1.5.99.14) from Paenarthrobacter nicotinovorans (see paper)
KDHB_PAENI / O87682 6-hydroxypseudooxynicotine dehydrogenase complex subunit beta; Ketone dehydrogenase small FeS subunit; EC 1.5.99.14 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
AAK64247.1 kdhS from Paenarthrobacter nicotinovorans (see paper)
    45% identity, 70% coverage of query (128 bits)

7dqxC / O87682 Crystal structure of xanthine dehydrogenase family protein
    45% identity, 70% coverage of query (127 bits)

picA3 / A0A1X9WE63 picolinate 6-hydroxylase γ subunit from Alcaligenes faecalis (see paper)
    39% identity, 71% coverage of query (119 bits)

spmC / F8G0N8 3-succinoylpyridine monooxygenase ferredoxin subunit from Pseudomonas putida (strain DSM 28022 / S16) (see paper)
    41% identity, 75% coverage of query (116 bits)

3hrdD / Q0QLF3 Crystal structure of nicotinate dehydrogenase (see paper)
    41% identity, 71% coverage of query (115 bits)

ndhS / Q0QLF3 nicotinate hydroxylase 23 kD subunit (EC 1.17.1.5) from Eubacterium barkeri (see paper)
NDSFS_EUBBA / Q0QLF3 Nicotinate dehydrogenase small FeS subunit; NDH; Nicotinic acid hydroxylase small FeS subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see 3 papers)
    41% identity, 71% coverage of query (115 bits)

PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit from Pseudomonas simiae WCS417
C7A11_18890 / A0A1N7UJP4 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae (see paper)
    41% identity, 72% coverage of query (115 bits)

YgeU / b2868 putative xanthine dehydrogenase iron-sulfur-binding subunit XdhC (EC 1.17.1.4) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
xdhC / Q46801 putative xanthine dehydrogenase iron-sulfur-binding subunit XdhC (EC 1.17.1.4) from Escherichia coli (strain K12) (see 2 papers)
    40% identity, 73% coverage of query (115 bits)

A0A1S4G2F8 xanthine dehydrogenase (EC 1.17.1.4) from Aedes aegypti (see paper)
    39% identity, 71% coverage of query (112 bits)

nicA / Q88FX9 nicotinate hydroxylase small subunit (EC 1.17.2.1) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
NICA_PSEPK / Q88FX9 Nicotinate dehydrogenase subunit A; Nicotinate degradation protein A; Nicotinate dehydrogenase small subunit; EC 1.17.2.1 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 3 papers)
Q88FX9 nicotinate dehydrogenase (cytochrome) (EC 1.17.2.1) from Pseudomonas putida (see paper)
    40% identity, 71% coverage of query (111 bits)

PP_3621 vanillin dehydrogenase, iorA-like component from Pseudomonas putida KT2440
    39% identity, 72% coverage of query (110 bits)

A0A1S4F2J6 xanthine dehydrogenase (EC 1.17.1.4) from Aedes aegypti (see paper)
    41% identity, 70% coverage of query (109 bits)

XDH_EMENI / Q12553 Xanthine dehydrogenase; Purine hydroxylase I; EC 1.17.1.4 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see paper)
hxA xanthine dehydrogenase (purine hydroxylase I); EC 1.17.1.4 from Emericella nidulans (see 2 papers)
    34% identity, 81% coverage of query (107 bits)

B1PHD1 nicotinate dehydrogenase (EC 1.17.1.5) from Comamonas testosteroni (see paper)
    32% identity, 71% coverage of query (94.4 bits)

Q8R387 aldehyde oxidase (EC 1.2.3.1) from Mus musculus (see paper)
    37% identity, 71% coverage of query (86.7 bits)

AOXA_MOUSE / O54754 Aldehyde oxidase 1; Azaheterocycle hydroxylase 1; Retinal oxidase; EC 1.2.3.1; EC 1.17.3.- from Mus musculus (Mouse) (see 8 papers)
O54754 aldehyde oxidase (EC 1.2.3.1) from Oryctolagus cuniculus (see paper)
    37% identity, 71% coverage of query (86.7 bits)

6a7xA Rat xanthine oxidoreductase, d428a variant, NAD bound form
    36% identity, 71% coverage of query (83.2 bits)

Build an alignment

Build an alignment for CA265_RS09870 and 35 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory