Sites on a Tree

 

Searching for up to 100 curated homologs for CA265_RS19300 FitnessBrowser__Pedo557:CA265_RS19300 (399 a.a.)

Found high-coverage hits (≥70%) to 12 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

L2HDH_INDAL / S2DJ52 L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Indibacter alkaliphilus (strain CCUG 57479 / KCTC 22604 / LW1) (see paper)
    55% identity, 95% coverage of query (462 bits)

LHGD_ECOLU / B7N6P4 L-2-hydroxyglutarate dehydrogenase; L2HG dehydrogenase; L2HG:quinone oxidoreductase; EC 1.1.5.13 from Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) (see paper)
    45% identity, 98% coverage of query (345 bits)

lhgO / Q88IT9 (S)-2-hydroxyglutarate oxidase from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
    45% identity, 98% coverage of query (343 bits)

LhgD / b2660 L-2-hydroxyglutarate dehydrogenase (EC 1.1.5.13) from Escherichia coli K-12 substr. MG1655 (see 9 papers)
lhgD / P37339 L-2-hydroxyglutarate dehydrogenase (EC 1.1.5.13) from Escherichia coli (strain K12) (see 7 papers)
LHGD_ECOLI / P37339 L-2-hydroxyglutarate dehydrogenase; L2HG dehydrogenase; L2HG:quinone oxidoreductase; EC 1.1.5.13 from Escherichia coli (strain K12) (see 3 papers)
ygaF / RF|NP_417146 uncharacterized protein ygaF from Escherichia coli K12 (see 2 papers)
    44% identity, 98% coverage of query (340 bits)

L2HDH_HUMAN / Q9H9P8 L-2-hydroxyglutarate dehydrogenase, mitochondrial; Duranin; EC 1.1.99.2 from Homo sapiens (Human) (see 4 papers)
Q9H9P8 L-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2) from Homo sapiens (see 2 papers)
    45% identity, 99% coverage of query (337 bits)

8w78A Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase in complex with fad and 2-oxoglutarate
    45% identity, 99% coverage of query (334 bits)

8w7fB / Q9VJ28 Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase bound with fad and a sulfate ion (see paper)
    45% identity, 99% coverage of query (333 bits)

LHGD_SALHO / A0A5Y6MCT2 L-2-hydroxyglutarate dehydrogenase; L2HG dehydrogenase; L2HG:quinone oxidoreductase; EC 1.1.5.13 from Salmonella houtenae (see paper)
    43% identity, 98% coverage of query (333 bits)

Build an alignment

Build an alignment for CA265_RS19300 and 8 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

L2HDH_ARATH / Q9LES4 L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
    27% identity, 99% coverage of query (125 bits)

Q70GP9 glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides subsp. mycoides (see paper)
glpO glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides subsp. mycoides SC (see paper)
    26% identity, 70% coverage of query (79.3 bits)

mqo / O24913 malate:quinone oxidoreductase (EC 1.1.5.4) from Helicobacter pylori (strain ATCC 700392 / 26695) (see 4 papers)
O24913 malate dehydrogenase (quinone) (EC 1.1.5.4) from Helicobacter pylori (see paper)
    24% identity, 96% coverage of query (62.4 bits)

C6KT09 malate dehydrogenase (quinone) (EC 1.1.5.4) from Plasmodium falciparum (see 2 papers)
    24% identity, 97% coverage of query (61.6 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory