Sites on a Tree

 

Searching for up to 100 curated homologs for CA265_RS19870 FitnessBrowser__Pedo557:CA265_RS19870 (466 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

YgjZ / b3092 D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli K-12 substr. MG1655 (see 7 papers)
uxaC / P0A8G3 D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli (strain K12) (see 5 papers)
UXAC_ECOLI / P0A8G3 Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Escherichia coli (strain K12) (see paper)
A0A140N3B4 glucuronate isomerase (EC 5.3.1.12) from Escherichia coli (see paper)
uxaC / RF|NP_417563 uronate isomerase from Escherichia coli K12 (see 4 papers)
    52% identity, 100% coverage of query (505 bits)

UXAC_BACSU / O34808 Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Bacillus subtilis (strain 168) (see paper)
    50% identity, 100% coverage of query (492 bits)

uxaC / Q9WXR9 hexuronate isomerase monomer (EC 5.3.1.12) from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
UXAC_THEMA / Q9WXR9 Uronate isomerase; D-GalA/D-TagA isomerase; D-GlcA/D-FruA isomerase; Glucuronate isomerase; Hexuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see 2 papers)
    37% identity, 99% coverage of query (281 bits)

Build an alignment

Build an alignment for CA265_RS19870 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory