Searching for up to 100 curated homologs for CA265_RS19875 FitnessBrowser__Pedo557:CA265_RS19875 (548 a.a.)
Found high-coverage hits (≥70%) to 9 curated proteins.
Removed hits that are identical to the query, leaving 8
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
lgnE / BAM68208.1 D-idonate dehydratase lgnE from Paracoccus laeviglucosivorans (see 2 papers)
33% identity, 100% coverage of query (266 bits)
C785_RS13685 / J3DH42 D-arabinonate dehydratase (EC 4.2.1.5) from Herbaspirillum sp. CF444 (see paper)
33% identity, 99% coverage of query (266 bits)
YgjW / b3091 D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
uxaA / P42604 D-altronate dehydratase (EC 4.2.1.7) from Escherichia coli (strain K12) (see 3 papers)
UXAA_ECOLI / P42604 Altronate dehydratase; D-altronate hydro-lyase; EC 4.2.1.7 from Escherichia coli (strain K12) (see 2 papers)
33% identity, 99% coverage of query (258 bits)
SMc02776 D-arabinoate dehydratase (EC 4.2.1.5); also involved in L-fucose catabolism from Sinorhizobium meliloti 1021
32% identity, 99% coverage of query (248 bits)
YhaG / b3128 (EC 4.2.1.42) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
garD / P39829 galactarate dehydratase (EC 4.2.1.42) from Escherichia coli (strain K12) (see 5 papers)
GARD_ECOLI / P39829 Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 95% coverage of query (231 bits)
PS417_04210 Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae WCS417
31% identity, 95% coverage of query (226 bits)
HSERO_RS15800 Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae SmR1
31% identity, 95% coverage of query (218 bits)
6u7lA / P39829 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
30% identity, 95% coverage of query (193 bits)
Build an alignment for CA265_RS19875 and 8 homologs with ≥ 30% identity
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Lawrence Berkeley National Laboratory