Sites on a Tree

 

Searching for up to 100 curated homologs for CCNA_00866 FitnessBrowser__Caulo:CCNA_00866 (384 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Ga0059261_1895 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Sphingomonas koreensis DSMZ 15582
    61% identity, 98% coverage of query (447 bits)

HSERO_RS19360 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae SmR1
    55% identity, 98% coverage of query (403 bits)

SMa0247 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming from Sinorhizobium meliloti 1021
    53% identity, 98% coverage of query (359 bits)

Build an alignment

Build an alignment for CCNA_00866 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory