Sites on a Tree

 

Searching for up to 100 curated homologs for CCNA_01698 FitnessBrowser__Caulo:CCNA_01698 (261 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

CA265_RS22975 periplasmic 3-ketotrehalose hydrolase (DUF1080) from Pedobacter sp. GW460-11-11-14-LB5
    64% identity, 93% coverage of query (324 bits)

4qhzC / A6LIT1 Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
    53% identity, 91% coverage of query (258 bits)

Echvi_2921 predicted 3-ketoglycoside hydrolase (DUF1080) from Echinicola vietnamensis KMM 6221, DSM 17526
    50% identity, 96% coverage of query (243 bits)

Build an alignment

Build an alignment for CCNA_01698 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

BT2157 periplasmic 3-ketoglycoside hydrolase from Bacteroides thetaiotaomicron VPI-5482
BT_2157 / Q8A5T1 3'-ketodisaccharide hydrolase (EC 3.2.1.218) from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) (see 3 papers)
    25% identity, 79% coverage of query (50.4 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory