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Searching for up to 100 curated homologs for CCNA_02492 FitnessBrowser__Caulo:CCNA_02492 (216 a.a.)

Found high-coverage hits (≥70%) to 51 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

pcaG / P00436 protocatechuate 3,4-dioxygenase α subunit (EC 1.13.11.3) from Pseudomonas putida (see paper)
pcaG / AAB41025.1 protocatechuate 3,4-dioxygenase, alpha subunit from Pseudomonas putida (see paper)
    42% identity, 92% coverage of query (137 bits)

3lxvA / P00436 Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
    42% identity, 92% coverage of query (137 bits)

4whsC 4-fluorocatechol bound to protocatechuate 3,4-dioxygenase (pseudomonas putida) at ph 8.5
    42% identity, 92% coverage of query (137 bits)

4whrA Anhydride reaction intermediate trapped in protocatechuate 3,4- dioxygenase (pseudomonas putida) at ph 8.5
    42% identity, 92% coverage of query (137 bits)

4whqA Alkylperoxo reaction intermediate trapped in protocatechuate 3,4- dioxygenase (pseudomonas putida) at ph 6.5
    42% identity, 92% coverage of query (137 bits)

4whoA Resting protocatechuate 3,4-dioxygenase (pseudomonas putida) at ph 8.5
    42% identity, 92% coverage of query (137 bits)

3pcmF Structure of protocatechuate 3,4-dioxygenase complexed with 6- hydroxynicotinic acid n-oxide and cyanide
    42% identity, 92% coverage of query (137 bits)

3pclA Structure of protocatechuate 3,4-dioxygenase complexed with 2- hydroxyisonicotinic acid n-oxide and cyanide
    42% identity, 92% coverage of query (137 bits)

3pciA Structure of protocatechuate 3,4-dioxygenase complexed with 3-iodo-4- hydroxybenzoate
    42% identity, 92% coverage of query (137 bits)

3pchA Structure of protocatechuate 3,4-dioxygenase complexed with 3-chloro- 4-hydroxybenzoate
    42% identity, 92% coverage of query (137 bits)

3pcgC Structure of protocatechuate 3,4-dioxygenase complexed with the inhibitor 4-hydroxyphenylacetate
    42% identity, 92% coverage of query (137 bits)

3pcfA Structure of protocatechuate 3,4-dioxygenase complexed with 3-fluro-4- hydroxybenzoate
    42% identity, 92% coverage of query (137 bits)

3pceC Structure of protocatechuate 3,4-dioxygenase complexed with 3- hydroxyphenylacetate
    42% identity, 92% coverage of query (137 bits)

3pcbF Structure of protocatechuate 3,4-dioxygenase complexed with 3- hydroxybenzoate
    42% identity, 92% coverage of query (137 bits)

3mi5A Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
    42% identity, 92% coverage of query (137 bits)

3mflA Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
    42% identity, 92% coverage of query (137 bits)

3lxvB Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
    42% identity, 92% coverage of query (137 bits)

I0DHJ0 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Stenotrophomonas maltophilia (see 2 papers)
    41% identity, 92% coverage of query (135 bits)

pcaG2 / Q93PS1 protocatechuate 3,4-dioxygenase type II α subunit (EC 1.13.11.3) from Hydrogenophaga intermedia (see 4 papers)
    38% identity, 90% coverage of query (133 bits)

A8I4B7 protocatechuate 3,4-dioxygenase (EC 1.13.11.3) from Chromohalobacter sp. (see paper)
    44% identity, 93% coverage of query (129 bits)

2buqA / P20371 Crystal structure of wild-type protocatechuate 3,4-dioxygenase from acinetobacter sp. Adp1 in complex with catechol (see paper)
    42% identity, 91% coverage of query (129 bits)

pcaG / RF|YP_046376.1 protocatechuate 3,4-dioxygenase, alpha chain; EC 1.13.11.3 from Acinetobacter sp. ADP1 (see 3 papers)
    42% identity, 91% coverage of query (129 bits)

2buuA Crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. Adp1 mutant r457s in complex with 4-nitrocatechol
    42% identity, 91% coverage of query (129 bits)

pcaG / AAC37154.1 protocatechuate 3,4-dioxygenase alpha subunit from Acinetobacter baylyi (see 11 papers)
    42% identity, 91% coverage of query (127 bits)

pcaG / AAF34267.1 protocatechuate 3,4-dioxygenase alpha chain from Agrobacterium tumefaciens (see 2 papers)
    41% identity, 92% coverage of query (125 bits)

A0A193DXA9 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Rhizobium sp. LMB-1 (see paper)
    40% identity, 92% coverage of query (124 bits)

Q0SH26 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Rhodococcus jostii (see paper)
    38% identity, 99% coverage of query (123 bits)

pcaG / AAC38244.1 protocatechuate dioxygenase alpha subunit from Rhodococcus opacus (see paper)
    37% identity, 99% coverage of query (121 bits)

pcaH / RF|YP_046375.1 protocatechuate 3,4-dioxygenase, beta chain; EC 1.13.11.3 from Acinetobacter sp. ADP1 (see 3 papers)
pcaH / AAC37153.1 protocatechuate 3,4-dioxygenase beta subunit from Acinetobacter baylyi (see 11 papers)
    33% identity, 73% coverage of query (95.9 bits)

2bumB / P20372 Crystal structure of wild-type protocatechuate 3,4-dioxygenase from acinetobacter sp. Adp1 (see paper)
    33% identity, 73% coverage of query (95.5 bits)

2buqB Crystal structure of wild-type protocatechuate 3,4-dioxygenase from acinetobacter sp. Adp1 in complex with catechol
    33% identity, 73% coverage of query (95.5 bits)

1eocB Crystal structure of acinetobacter sp. Adp1 protocatechuate 3,4- dioxygenase in complex with 4-nitrocatechol
    33% identity, 73% coverage of query (95.5 bits)

1eoaB Crystal structure of acinetobacter sp. Adp1 protocatechuate 3,4- dioxygenase in complex with cyanide
    33% identity, 73% coverage of query (95.5 bits)

1eo9B Crystal structure of acinetobacter sp. Adp1 protocatechuate 3,4- dioxygenase at ph < 7.0
    33% identity, 73% coverage of query (95.5 bits)

A0A193DXP2 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Rhizobium sp. LMB-1 (see paper)
    34% identity, 89% coverage of query (94.4 bits)

pcaH / AAF34268.1 protocatechuate 3,4-dioxygenase beta chain from Agrobacterium tumefaciens (see 2 papers)
    34% identity, 89% coverage of query (94.0 bits)

pcaH / P00437 protocatechuate 3,4-dioxygenase β subunit (EC 1.13.11.3) from Pseudomonas putida (see paper)
pcaH / AAB41024.1 protocatechuate 3,4-dioxygenase, beta subunit from Pseudomonas putida (see paper)
    36% identity, 72% coverage of query (93.2 bits)

P00437 Protocatechuate 3,4-dioxygenase beta chain; 3,4-PCD; EC 1.13.11.3 from Pseudomonas putida (Arthrobacter siderocapsulatus)
    36% identity, 72% coverage of query (93.2 bits)

4whrB Anhydride reaction intermediate trapped in protocatechuate 3,4- dioxygenase (pseudomonas putida) at ph 8.5
    36% identity, 72% coverage of query (93.2 bits)

4whqB Alkylperoxo reaction intermediate trapped in protocatechuate 3,4- dioxygenase (pseudomonas putida) at ph 6.5
    36% identity, 72% coverage of query (93.2 bits)

4whqF Alkylperoxo reaction intermediate trapped in protocatechuate 3,4- dioxygenase (pseudomonas putida) at ph 6.5
    36% identity, 72% coverage of query (92.8 bits)

3lktM / P00437 Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
    36% identity, 72% coverage of query (92.4 bits)

3lxvM Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
    36% identity, 72% coverage of query (92.4 bits)

3mv4M Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
    36% identity, 72% coverage of query (92.4 bits)

3mi5M Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
    36% identity, 72% coverage of query (92.4 bits)

3mflM Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
    36% identity, 72% coverage of query (92.4 bits)

I0DHJ1 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Stenotrophomonas maltophilia (see 2 papers)
    34% identity, 72% coverage of query (88.6 bits)

Build an alignment

Build an alignment for CCNA_02492 and 47 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Additional hits (identity < 30%)

4ilvB / G2NEL6 Structure of the dioxygenase domain of sacte_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium streptomyces sp. Sirexaa-e (see paper)
    27% identity, 90% coverage of query (50.4 bits)

3o6rA Crystal structure of 4-chlorocatechol dioxygenase from rhodococcus opacus 1cp in complex with pyrogallol
    24% identity, 90% coverage of query (42.4 bits)

3o6jA Crystal structure of 4-chlorocatechol dioxygenase from rhodococcus opacus 1cp in complex with hydroxyquinol
    24% identity, 90% coverage of query (42.4 bits)

3o32A / O67987 Crystal structure of 4-chlorocatechol dioxygenase from rhodococcus opacus 1cp in complex with 3,5-dichlorocatechol (see paper)
    24% identity, 90% coverage of query (42.4 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory