Searching for up to 100 curated homologs for CCNA_02705 (69 a.a.)
Found high-coverage hits (≥70%) to 29 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
CspA / b3556 cold shock protein CspA from Escherichia coli K-12 substr. MG1655 (see 30 papers)
CSPA_ECOLI / P0A9X9 Cold shock protein CspA; CSP-A; 7.4 kDa cold shock protein; CS7.4 from Escherichia coli (strain K12) (see 3 papers)
cspA / RF|NP_418012 7.4 kDa cold shock protein from Escherichia coli K12 (see 13 papers)
46% identity, 97% coverage of query (69.7 bits)
7ot5B 7ot5B (see paper)
45% identity, 97% coverage of query (67.8 bits)
CSPJ_SALTS / E1WGN1 Cold shock-like protein CspJ from Salmonella typhimurium (strain SL1344) (see paper)
52% identity, 75% coverage of query (67.4 bits)
MsmC / b0623 transcription antiterminator and regulator of RNA stability from Escherichia coli K-12 substr. MG1655 (see 40 papers)
CSPE_ECOLW / E0J1Q3 Cold shock-like protein CspE; CSP-E from Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W) (see paper)
CSPE_ECOLI / P0A972 Cold shock-like protein CspE; CSP-E from Escherichia coli (strain K12) (see paper)
cspE / MB|P0A972 cold shock-like protein CspE from Escherichia coli K12 (see 3 papers)
57% identity, 71% coverage of query (66.2 bits)
CspG / b0990 cold shock protein CspG from Escherichia coli K-12 substr. MG1655 (see 12 papers)
cueR transcriptional repressor activity CueR from Escherichia coli K12 (see paper)
cspG / GB|BAA09669.1 cold shock-like protein CspG from Escherichia coli K12 (see paper)
50% identity, 78% coverage of query (65.9 bits)
MsmB / b1823 CspA family stress protein CspC from Escherichia coli K-12 substr. MG1655 (see 15 papers)
CSPC_ECOLW / E0J500 Cold shock-like protein CspC; CSP-C from Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W) (see paper)
CSPC_ECOLI / P0A9Y6 Cold shock-like protein CspC; CSP-C from Escherichia coli (strain K12) (see paper)
50% identity, 78% coverage of query (64.7 bits)
CSPD_BACSU / P51777 Cold shock protein CspD from Bacillus subtilis (strain 168) (see paper)
53% identity, 90% coverage of query (64.3 bits)
CspJ / b1552 Qin prophage; cold shock-like protein CspI from Escherichia coli K-12 substr. MG1655 (see 6 papers)
cspI / RF|NP_416070.1 cold shock-like protein CspI from Escherichia coli (see paper)
51% identity, 74% coverage of query (63.9 bits)
cspA / CAD92346.1 cold shock protein A from Lactobacillus casei (see paper)
53% identity, 83% coverage of query (63.5 bits)
capA / AAC45996.1 cold acclimation protein A, partial from Pseudomonas fragi (see paper)
49% identity, 80% coverage of query (62.8 bits)
A0R5E1 Probable cold shock protein A from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)
54% identity, 75% coverage of query (62.8 bits)
LIN28_DROME / Q9VRN5 Protein lin-28 homolog from Drosophila melanogaster (Fruit fly) (see paper)
48% identity, 78% coverage of query (62.0 bits)
CspB / b1557 Qin prophage; cold shock-like protein CspB from Escherichia coli K-12 substr. MG1655 (see 19 papers)
CSPB_ECOLI / P36995 Cold shock-like protein CspB; CSP-B from Escherichia coli (strain K12) (see paper)
50% identity, 75% coverage of query (61.6 bits)
2haxA Crystal structure of bacillus caldolyticus cold shock protein in complex with hexathymidine
49% identity, 83% coverage of query (57.8 bits)
1c9oA / P41016 Crystal structure analysis of the bacillus caldolyticus cold shock protein bc-csp (see paper)
49% identity, 83% coverage of query (57.8 bits)
CSPB_BACSU / P32081 Cold shock protein CspB; Major cold shock protein from Bacillus subtilis (strain 168) (see 2 papers)
2es2A / P32081 Crystal structure analysis of the bacillus subtilis cold shock protein bs-cspb in complex with hexathymidine (see paper)
51% identity, 83% coverage of query (57.0 bits)
3pf4B Crystal structure of bs-cspb in complex with r(gucuuua)
51% identity, 83% coverage of query (57.0 bits)
O54310 Cold shock-like protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
47% identity, 80% coverage of query (56.2 bits)
LIN28_CAEEL / P92186 Protein lin-28; Abnormal cell lineage protein 28 from Caenorhabditis elegans (see 24 papers)
42% identity, 83% coverage of query (52.8 bits)
CHSP1_HUMAN / Q9Y2V2 Calcium-regulated heat-stable protein 1; Calcium-regulated heat-stable protein of 24 kDa; CRHSP-24 from Homo sapiens (Human) (see 3 papers)
50% identity, 72% coverage of query (50.1 bits)
CHSP1_RAT / Q9WU49 Calcium-regulated heat stable protein 1; Calcium-regulated heat-stable protein of 24 kDa; CRHSP-24 from Rattus norvegicus (Rat) (see 2 papers)
50% identity, 72% coverage of query (50.1 bits)
7f3iA / Q9Y2T7 Crystal structure of human ybx2 csd in complex with m5c RNA in space group p212121
40% identity, 74% coverage of query (45.4 bits)
Q9VVA0 Cold shock domain-containing protein CG9705 from Drosophila melanogaster (Fruit fly)
44% identity, 75% coverage of query (45.4 bits)
6a6jA / P67809 Crystal structure of zebra fish y-box protein1 (yb-1) cold-shock domain in complex with 6mer m5c RNA (see paper)
40% identity, 74% coverage of query (44.3 bits)
6lmrA Solution structure of cold shock domain and ssdna complex
40% identity, 74% coverage of query (44.3 bits)
YBOX2_MOUSE / Q9Z2C8 Y-box-binding protein 2; FRGY2 homolog; Germ cell-specific Y-box-binding protein from Mus musculus (Mouse) (see 10 papers)
40% identity, 74% coverage of query (43.1 bits)
YBOX1_DANRE / B5DE31 Y-box-binding protein 1; YB-1; ZfY1; Y-box transcription factor from Danio rerio (Zebrafish) (Brachydanio rerio) (see 2 papers)
40% identity, 71% coverage of query (42.4 bits)
YBOX1_RABIT / Q28618 Y-box-binding protein 1; YB-1; Nuclease-sensitive element-binding protein 1; Y-box transcription factor; p50 from Oryctolagus cuniculus (Rabbit) (see 5 papers)
38% identity, 71% coverage of query (42.0 bits)
YBOX1_HUMAN / P67809 Y-box-binding protein 1; YB-1; CCAAT-binding transcription factor I subunit A; CBF-A; DNA-binding protein B; DBPB; Enhancer factor I subunit A; EFI-A; Nuclease-sensitive element-binding protein 1; Y-box transcription factor from Homo sapiens (Human) (see 25 papers)
38% identity, 71% coverage of query (42.0 bits)
Build an alignment for CCNA_02705 and 29 homologs with ≥ 30% identity
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Lawrence Berkeley National Laboratory