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Searching for up to 100 curated homologs for CCNA_03184 FitnessBrowser__Caulo:CCNA_03184 (564 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

mcd / D3JV03 (2S)-methylsuccinyl-CoA dehydrogenase monomer (EC 1.3.8.12) from Cereibacter sphaeroides (see paper)
MCD_CERSP / D3JV03 (2S)-methylsuccinyl-CoA dehydrogenase; MCD; EC 1.3.8.12 from Cereibacter sphaeroides (Rhodobacter sphaeroides) (see paper)
D3JV03 (2S)-methylsuccinyl-CoA dehydrogenase (EC 1.3.8.12) from Cereibacter sphaeroides (see 2 papers)
    65% identity, 97% coverage of query (691 bits)

6es9A / A1B5Y0 Methylsuccinyl-coa dehydrogenase of paracoccus denitrificans with bound flavin adenine dinucleotide (see paper)
    65% identity, 94% coverage of query (676 bits)

A1B5Y0 (2S)-methylsuccinyl-CoA dehydrogenase (EC 1.3.8.12) from Paracoccus denitrificans (see paper)
    65% identity, 94% coverage of query (676 bits)

ACADS_RAT / P15651 Short-chain specific acyl-CoA dehydrogenase, mitochondrial; SCAD; Butyryl-CoA dehydrogenase; EC 1.3.8.1 from Rattus norvegicus (Rat) (see 2 papers)
P15651 short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) from Rattus norvegicus (see 2 papers)
    35% identity, 72% coverage of query (220 bits)

ACADM_DROME / Q9VSA3 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial; EC 1.3.8.7 from Drosophila melanogaster (Fruit fly) (see paper)
    31% identity, 76% coverage of query (197 bits)

Build an alignment

Build an alignment for CCNA_03184 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

ACADL / P28330 long-chain-acyl-CoA dehydrogenase monomer (EC 1.3.8.8; EC 1.3.8.7) from Homo sapiens (see 8 papers)
ACADL_HUMAN / P28330 Long-chain specific acyl-CoA dehydrogenase, mitochondrial; LCAD; EC 1.3.8.8 from Homo sapiens (Human) (see 3 papers)
    26% identity, 73% coverage of query (147 bits)

ACADL_MOUSE / P51174 Long-chain specific acyl-CoA dehydrogenase, mitochondrial; LCAD; EC 1.3.8.8 from Mus musculus (Mouse) (see 2 papers)
P51174 long-chain acyl-CoA dehydrogenase (EC 1.3.8.8) from Mus musculus (see paper)
    28% identity, 72% coverage of query (147 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory