Searching for up to 100 curated homologs for DDA3937_RS16230 (61 a.a.)
Found high-coverage hits (≥70%) to 12 curated proteins.
Removed hits that are identical to the query, leaving 11
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
CSRA_YERE8 / A1JK11 Translational regulator CsrA; Carbon storage regulator; Post-transcriptional regulator RsmA from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) (see paper)
98% identity, 100% coverage of query (121 bits)
CSRA_PECCC / P0DKY7 Translational regulator CsrA; Carbon storage regulator; Repressor RsmA from Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora subsp. carotovora) (see paper)
98% identity, 100% coverage of query (120 bits)
ZfiA / b2696 carbon storage regulator from Escherichia coli K-12 substr. MG1655 (see 33 papers)
CSRA_ECOLI / P69913 Carbon storage regulator; Translational dual regulator CsrA from Escherichia coli (strain K12) (see 21 papers)
CSRA_SALTY / P69917 Translational regulator CsrA; Carbon storage regulator from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
97% identity, 100% coverage of query (118 bits)
CSRA_PROMI / Q93MI1 Translational regulator CsrA; Carbon storage regulator from Proteus mirabilis (see paper)
95% identity, 98% coverage of query (116 bits)
CSRA_PSEAE / O69078 Translational regulator CsrA; Carbon storage regulator; Global translational regulatory protein RsmA from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 4 papers)
85% identity, 100% coverage of query (107 bits)
7yr6E / O69078 Cryo-em structure of pseudomonas aeruginosa rsmz RNA in complex with two rsma protein dimers (see paper)
93% identity, 90% coverage of query (104 bits)
CSRA2_PSEPH / P69920 Translational regulator CsrA2; Carbon storage regulator 2; Regulator of secondary metabolites RsmA from Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0) (see 6 papers)
76% identity, 100% coverage of query (93.6 bits)
2mf0A / P0DPC3 Structural basis of the non-coding RNA rsmz acting as protein sponge: conformer l of rsmz(1-72)/rsme(dimer) 1to3 complex (see paper)
71% identity, 95% coverage of query (92.0 bits)
CSRA1_PSEPH / P0DPC3 Translational regulator CsrA1; Carbon storage regulator 1; Regulator of secondary metabolites RsmE from Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0) (see 6 papers)
71% identity, 95% coverage of query (91.3 bits)
CSRA_GEOTN / A4ISU9 Translational regulator CsrA from Geobacillus thermodenitrificans (strain NG80-2) (see paper)
51% identity, 97% coverage of query (75.1 bits)
CSRA_BACSU / P33911 Translational regulator CsrA from Bacillus subtilis (strain 168) (see 4 papers)
42% identity, 98% coverage of query (65.5 bits)
Build an alignment for DDA3937_RS16230 and 11 homologs with ≥ 30% identity
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Lawrence Berkeley National Laboratory