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Searching for up to 100 curated homologs for Dsui_3281 FitnessBrowser__PS:Dsui_3281 (296 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

FdoH / b3893 formate dehydrogenase O subunit β (EC 1.17.5.3) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
fdoH / P0AAJ5 formate dehydrogenase O subunit β (EC 1.17.5.3) from Escherichia coli (strain K12) (see 3 papers)
    71% identity, 97% coverage of query (442 bits)

FdnH / b1475 formate dehydrogenase N subunit β from Escherichia coli K-12 substr. MG1655 (see 5 papers)
fdnH / P0AAJ3 formate dehydrogenase N subunit β from Escherichia coli (strain K12) (see 5 papers)
FDNH_ECOLI / P0AAJ3 Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; Anaerobic formate dehydrogenase iron-sulfur subunit; Formate dehydrogenase-N subunit beta; FDH-N subunit beta from Escherichia coli (strain K12) (see 2 papers)
P0AAJ3 formate dehydrogenase-N (subunit 2/3) (EC 1.17.5.3) from Escherichia coli (see paper)
TC 5.A.3.2.1 / P0AAJ3 FdnH aka B1475, component of Anaerobic, respiratory, membrane-bound formate dehydrogenase, FdnGHI. Two protons are consumed in the cytoplasm while two protons are released in the periplasm, contributing to the pmf from Escherichia coli (see 5 papers)
fdnH / RF|NP_415992 formate dehydrogenase-N subunit beta from Escherichia coli K12 (see 8 papers)
    69% identity, 99% coverage of query (436 bits)

1kqfB / P0AAJ3 Formate dehydrogenase n from e. Coli (see paper)
    69% identity, 98% coverage of query (433 bits)

fdnH-3 / Q727P4 formate dehydrogenase 3 subunit β (EC 1.17.2.3) from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 6 papers)
FDNGB_DESVH / Q727P4 Formate dehydrogenase 2 subunit beta (cytochrome c-553); FDH2 subunit beta (cytochrome c-553); Formate dehydrogenase small subunit (cytochrome c-553) from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 3 papers)
    37% identity, 71% coverage of query (138 bits)

fdnH-1 / Q72EJ0 formate dehydrogenase 1 β subunit (EC 1.17.1.9) from Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) (see 4 papers)
    35% identity, 79% coverage of query (136 bits)

8bqgB / Q72EJ0 W-formate dehydrogenase from desulfovibrio vulgaris - soaking with formate 1 min (see paper)
    35% identity, 71% coverage of query (128 bits)

8cm6D W-formate dehydrogenase c872a from desulfovibrio vulgaris - with formamide
    35% identity, 71% coverage of query (128 bits)

fdnH-3 / B8J4K8 formate dehydrogenase (cytochrome-c-553) β subunit (EC 1.17.2.3) from Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) (see 8 papers)
    35% identity, 71% coverage of query (127 bits)

1h0hB / Q8GC87 Tungsten containing formate dehydrogenase from desulfovibrio gigas (see paper)
    30% identity, 71% coverage of query (119 bits)

FDHB_MEGG1 / Q8GC87 Formate dehydrogenase subunit beta; FDH subunit beta; Formate dehydrogenase small subunit from Megalodesulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759) (Desulfovibrio gigas) (see 3 papers)
    30% identity, 71% coverage of query (119 bits)

Build an alignment

Build an alignment for Dsui_3281 and 10 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

HydL / b2996 hydrogenase 2 iron-sulfur protein (EC 1.12.5.1) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
hybA / P0AAJ8 hydrogenase 2 iron-sulfur protein from Escherichia coli (strain K12) (see 6 papers)
    29% identity, 93% coverage of query (106 bits)

ttrB / Q7CQM9 tetrathionate reductase β subunit from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 3 papers)
TTRB_SALTY / Q7CQM9 Tetrathionate reductase subunit B; Tetrathionate reductase electron transport protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 3 papers)
ttrB / CAB37414.1 tetrathionate reductase subunit B (TtrB) from Salmonella enterica subsp. enterica serovar Typhimurium (see 2 papers)
    29% identity, 76% coverage of query (97.1 bits)

TC 5.A.3.11.2 / O67279 SreB aka DmsB1 aka DMSO reductase chain B, component of The cytoplasmic sulfur/tetrathionate/polysulfide oxidoreductase, SreABC (Guiral et al., 2005) [While SreA and B most resemble 5.A.3.11.1, SreC most resembles 5.A.3.3.2.] from Aquifex aeolicus (see paper)
    28% identity, 71% coverage of query (90.5 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory