Sites on a Tree

 

Searching for up to 100 curated homologs for Echvi_0120 FitnessBrowser__Cola:Echvi_0120 (367 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

Removed hits that are identical to the query, leaving 2

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

CA265_RS11635 chorismate mutase (EC 5.4.99.5) from Pedobacter sp. GW460-11-11-14-LB5
    48% identity, 93% coverage of query (340 bits)

Build an alignment

Build an alignment for Echvi_0120 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Q8GLK7 3-deoxy-8-phosphooctulonate synthase (EC 2.5.1.55) from Aquifex pyrophilus (see paper)
    27% identity, 71% coverage of query (62.8 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory