Searching for up to 100 curated homologs for Echvi_0503 FitnessBrowser__Cola:Echvi_0503 (234 a.a.)
Found high-coverage hits (≥70%) to 23 curated proteins.
Removed hits that are identical to the query, leaving 22
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
CA265_RS08620 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp. GW460-11-11-14-LB5
71% identity, 99% coverage of query (355 bits)
Shewana3_2065 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Shewanella sp. ANA-3
60% identity, 98% coverage of query (295 bits)
YjfX / b4198 L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
ulaF / P39306 L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli (strain K12) (see paper)
ULAF_ECOLI / P39306 L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli (strain K12) (see 3 papers)
50% identity, 97% coverage of query (240 bits)
AraD / b0061 L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli K-12 substr. MG1655 (see 19 papers)
araD / P08203 L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli (strain K12) (see 18 papers)
ARAD_ECOLI / P08203 L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli (strain K12) (see 11 papers)
araD / GB|BAB96630.1 L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli K12 (see paper)
51% identity, 97% coverage of query (238 bits)
YiaS / b3583 L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
sgbE / P37680 L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli (strain K12) (see 3 papers)
SGBE_ECOLI / P37680 L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli (strain K12) (see 2 papers)
49% identity, 97% coverage of query (234 bits)
ARAD_BACSU / P94525 L-ribulose-5-phosphate 4-epimerase; Phosphoribulose isomerase; EC 5.1.3.4 from Bacillus subtilis (strain 168) (see paper)
50% identity, 97% coverage of query (233 bits)
1jdiA / P08203 Crystal structure of l-ribulose-5-phosphate 4-epimerase (see paper)
50% identity, 94% coverage of query (226 bits)
C4B4W3 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum (see paper)
40% identity, 92% coverage of query (136 bits)
6btgA Crystal structure of deoxyribose-phosphate aldolase bound with dhap from bacillus thuringiensis (see paper)
32% identity, 76% coverage of query (90.9 bits)
drdA / P0DTQ0 5-deoxy-D-ribulose 1-phosphate aldolase (EC 4.1.2.62) from Bacillus thuringiensis serovar kurstaki (strain ATCC 35866 / NRRL B-4488 / HD73) (see paper)
DRDA_BACT7 / P0DTQ0 5-deoxy-D-ribulose 1-phosphate aldolase; 5-deoxyribose disposal aldolase; EC 4.1.2.- from Bacillus thuringiensis serovar kurstaki (strain ATCC 35866 / NRRL B-4488 / HD73) (see paper)
P0DTQ0 5-deoxyribulose 1-phosphate aldolase (EC 4.1.2.62) from Bacillus thuringiensis serovar kurstaki (see paper)
32% identity, 76% coverage of query (90.9 bits)
Build an alignment for Echvi_0503 and 10 homologs with ≥ 30% identity
Or download the sequences
Prd / b2800 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Escherichia coli K-12 substr. MG1655 (see 9 papers)
fucA / P0AB87 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Escherichia coli (strain K12) (see 8 papers)
FUCA_ECOLI / P0AB87 L-fuculose phosphate aldolase; D-ribulose-phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Escherichia coli (strain K12) (see 7 papers)
fucA / RF|NP_417280 L-fuculose-1-phosphate aldolase from Escherichia coli K12 (see 3 papers)
26% identity, 89% coverage of query (63.2 bits)
2fuaA / P0AB87 L-fuculose 1-phosphate aldolase crystal form t with cobalt (see paper)
26% identity, 89% coverage of query (63.2 bits)
4fuaA L-fuculose-1-phosphate aldolase complex with pgh
26% identity, 89% coverage of query (62.8 bits)
1dzuP L-fuculose-1-phosphate aldolase from escherichia coli mutant t26a
26% identity, 89% coverage of query (61.2 bits)
7x78A L-fuculose 1-phosphate aldolase
25% identity, 90% coverage of query (59.3 bits)
BWI76_RS22915 L-fuculose phosphate aldolase (EC 4.1.2.17) from Klebsiella michiganensis M5al
25% identity, 90% coverage of query (58.5 bits)
MJ1418 / Q58813 fuculose-1-phosphate aldolase subunit (EC 4.1.2.17) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (see paper)
FUCA_METJA / Q58813 L-fuculose phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see 3 papers)
Q58813 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Methanocaldococcus jannaschii (see paper)
26% identity, 86% coverage of query (57.4 bits)
MTNB_YEAST / P47095 Methylthioribulose-1-phosphate dehydratase; MTRu-1-P dehydratase; EC 4.2.1.109 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
P47095 methylthioribulose 1-phosphate dehydratase (EC 4.2.1.109) from Saccharomyces cerevisiae (see paper)
27% identity, 76% coverage of query (56.2 bits)
ald2 / Q2RXI1 5-(methylthio)ribulose-1-phosphate aldolase (EC 4.1.2.62) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) (see 2 papers)
ALD2_RHORT / Q2RXI1 5-methylthioribulose-1-phosphate/5-deoxyribulose-1-phosphate aldolase; EC 4.1.2.62 from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) (see 2 papers)
28% identity, 85% coverage of query (53.9 bits)
I7MAL0 methylthioribulose 1-phosphate dehydratase (EC 4.2.1.109) from Tetrahymena thermophila (see paper)
26% identity, 74% coverage of query (48.5 bits)
4m6rA / Q96GX9 Structural and biochemical basis for the inhibition of cell death by apip, a methionine salvage enzyme (see paper)
28% identity, 72% coverage of query (46.6 bits)
MTNB_HUMAN / Q96GX9 Methylthioribulose-1-phosphate dehydratase; MTRu-1-P dehydratase; APAF1-interacting protein; hAPIP; EC 4.2.1.109 from Homo sapiens (Human) (see 4 papers)
Q96GX9 methylthioribulose 1-phosphate dehydratase (EC 4.2.1.109) from Homo sapiens (see 3 papers)
28% identity, 74% coverage of query (46.6 bits)
Or start over
Lawrence Berkeley National Laboratory