Sites on a Tree

 

Searching for up to 100 curated homologs for Echvi_1266 Echvi_1266 putative solute:sodium symporter small subunit (85 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Shew_2372 small component of L-lactate and L-malate uptake system from Shewanella loihica PV-4
    64% identity, 99% coverage of query (118 bits)

Sama_1522 small component of lactate uptake system from Shewanella amazonensis SB2B
    61% identity, 99% coverage of query (112 bits)

Psest_0346 small component of pyruvate/D-alanine transporter (TIGR03647) from Pseudomonas stutzeri RCH2
    49% identity, 99% coverage of query (87.8 bits)

HP15_1252 small component of pyruvate transporter (TIGR03647) from Marinobacter adhaerens HP15
    50% identity, 92% coverage of query (84.7 bits)

Build an alignment

Build an alignment for Echvi_1266 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory