Sites on a Tree

 

Searching for up to 100 curated homologs for Echvi_2921 FitnessBrowser__Cola:Echvi_2921 (251 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

CA265_RS22975 periplasmic 3-ketotrehalose hydrolase (DUF1080) from Pedobacter sp. GW460-11-11-14-LB5
    52% identity, 100% coverage of query (256 bits)

4qhzC / A6LIT1 Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
    56% identity, 88% coverage of query (251 bits)

CCNA_01698 predicted periplasmic 3-ketoglycoside hydrolase (DUF1080) from Caulobacter crescentus NA1000
    50% identity, 96% coverage of query (243 bits)

Build an alignment

Build an alignment for Echvi_2921 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory