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Searching for up to 100 curated homologs for Echvi_3019 FitnessBrowser__Cola:Echvi_3019 (387 a.a.)

Found high-coverage hits (≥70%) to 12 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

YliI / b0837 aldose sugar dehydrogenase YliI from Escherichia coli K-12 substr. MG1655 (see 5 papers)
yliI / P75804 aldose sugar dehydrogenase YliI from Escherichia coli (strain K12) (see 5 papers)
YLII_ECOLI / P75804 Aldose sugar dehydrogenase YliI; Asd; Soluble aldose sugar dehydrogenase YliI; EC 1.1.5.- from Escherichia coli (strain K12) (see 2 papers)
    40% identity, 85% coverage of query (266 bits)

2g8sA / P75804 Crystal structure of the soluble aldose sugar dehydrogenase (asd) from escherichia coli in the apo-form (see paper)
    40% identity, 83% coverage of query (262 bits)

hcuB / BAC81751.1 hydrophobic compound transport factor from Pseudomonas aeruginosa (see paper)
    41% identity, 83% coverage of query (250 bits)

7cdyA Crystal structure of glucose dehydrogenase
    36% identity, 84% coverage of query (234 bits)

7cgzA Glucose dehydrogenase
    34% identity, 84% coverage of query (204 bits)

I7A144 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus (see paper)
    33% identity, 83% coverage of query (180 bits)

2ismB / Q5SKS3 Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (ttha0570) from thermus theromophilus hb8
    33% identity, 83% coverage of query (178 bits)

Q8ZUN8 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum (see 2 papers)
    32% identity, 84% coverage of query (155 bits)

3a9gA / Q8ZUN8 Crystal structure of pqq-dependent sugar dehydrogenase apo-form (see paper)
    32% identity, 84% coverage of query (154 bits)

3a9hA Crystal structure of pqq-dependent sugar dehydrogenase holo-form
    32% identity, 84% coverage of query (154 bits)

Build an alignment

Build an alignment for Echvi_3019 and 10 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

sndH / Q402A8 L-sorbosone dehydrogenase 1 from Ketogulonicigenium vulgare (see paper)
    28% identity, 86% coverage of query (133 bits)

3dasA / Q9Z571 Structure of the pqq-bound form of aldose sugar dehydrogenase (adh) from streptomyces coelicolor
    28% identity, 83% coverage of query (111 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory