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Searching for up to 100 curated homologs for GFF1000 FitnessBrowser__WCS417:GFF1000 (428 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

DcrA / b2796 L-serine:H+ symporter SdaC from Escherichia coli K-12 substr. MG1655 (see 8 papers)
sdaC / P0AAD6 L-serine:H+ symporter SdaC from Escherichia coli (strain K12) (see 9 papers)
SDAC_ECOLI / P0AAD6 Serine transporter SdaC; H(+)/L-serine symporter; L-serine transport system from Escherichia coli (strain K12) (see 8 papers)
TC 2.A.42.2.1 / P0AAD6 Serine permease from Escherichia coli (see 5 papers)
    70% identity, 96% coverage of query (574 bits)

TdcC / b3116 threonine/serine:H+ symporter from Escherichia coli K-12 substr. MG1655 (see 4 papers)
tdcC / P0AAD8 threonine/serine:H+ symporter TdcC from Escherichia coli (strain K12) (see 5 papers)
TDCC_ECOLI / P0AAD8 Threonine/serine transporter TdcC; H(+)/threonine-serine symporter from Escherichia coli (strain K12) (see 3 papers)
TC 2.A.42.2.2 / P0AAD8 Threonine/Serine permease from Escherichia coli (see 6 papers)
    47% identity, 98% coverage of query (382 bits)

YqeG / b2845 putative transporter YqeG from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    35% identity, 94% coverage of query (253 bits)

Build an alignment

Build an alignment for GFF1000 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

CyuP / b3110 cysteine detoxification protein CyuP from Escherichia coli K-12 substr. MG1655 (see 7 papers)
cyuP / P42628 L-cysteine importer from Escherichia coli (strain K12) (see 8 papers)
DLST_ECOLI / P42628 Probable serine transporter from Escherichia coli (strain K12) (see 3 papers)
    25% identity, 97% coverage of query (124 bits)

DLST_ECO57 / Q8XAF5 Serine transporter from Escherichia coli O157:H7 (see paper)
    25% identity, 97% coverage of query (122 bits)

YhjV / b3539 putative transporter YhjV from Escherichia coli K-12 substr. MG1655 (see 3 papers)
    25% identity, 89% coverage of query (121 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory