Sites on a Tree

 

Searching for up to 100 curated homologs for GFF1040 Psest_1073 TRAP-type mannitol/chloroaromatic compound transport system, small permease component (200 a.a.)

Found high-coverage hits (≥70%) to 2 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.56.3.4 / D5ATK0 Tripartite ATP-independent periplasmic transporter, DctQ-2 component, component of The 2-ketomonocarboxylate transporter (presented in order of affinity - 2-oxovalerate [highest affinity, KD=0.1 μM], 2-oxoisovalerate, 2-oxobutyrate, 2-oxoisocaproate, 2-oxo-3-methylvalerate, pyruvate [lowest affinity, KD=3 μM]) from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (see paper)
    33% identity, 77% coverage of query (77.8 bits)

Build an alignment

Build an alignment for GFF1040 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

TC 2.A.56.3.1 / P74225 GtrA aka SLL1102, component of Tripartite glutamate:Na+ symporter (see paper)
    29% identity, 78% coverage of query (75.1 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory