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Searching for up to 100 curated homologs for GFF1101 FitnessBrowser__psRCH2:GFF1101 (520 a.a.)

Found high-coverage hits (≥70%) to 9 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q9I6Z2 NADH-dependent peroxiredoxin (EC 1.11.1.26) from Pseudomonas aeruginosa (see paper)
    85% identity, 100% coverage of query (875 bits)

AhpF / b0606 alkyl hydroperoxide reductase, AhpF component (EC 1.11.1.26) from Escherichia coli K-12 substr. MG1655 (see 9 papers)
ahpF / P35340 alkyl hydroperoxide reductase, AhpF component (EC 1.5.1.37) from Escherichia coli (strain K12) (see 10 papers)
P35340 NADH-dependent peroxiredoxin (subunit 1/2) (EC 1.11.1.26) from Escherichia coli (see 2 papers)
ahpF / GB|BAA35236.1 alkyl hydroperoxide reductase subunit F; EC 1.6.4.- from Escherichia coli K12 (see 5 papers)
    67% identity, 99% coverage of query (702 bits)

4ykgA Crystal structure of the alkylhydroperoxide reductase subunit f (ahpf) with NAD+ from escherichia coli
    67% identity, 99% coverage of query (702 bits)

4ykfA Crystal structure of the alkylhydroperoxide reductase subunit f (ahpf) with nadh from escherichia coli
    67% identity, 99% coverage of query (702 bits)

P35340 Alkyl hydroperoxide reductase subunit F; Alkyl hydroperoxide reductase F52A protein; EC 1.8.1.- from Escherichia coli (strain K12)
    67% identity, 99% coverage of query (702 bits)

1hyuA / P19480 Crystal structure of intact ahpf (see paper)
    66% identity, 99% coverage of query (696 bits)

ndh / BAA01545.1 NADH dehydrogenase, alpha-2 subunit from Bacillus alcalophilus (see paper)
    62% identity, 100% coverage of query (662 bits)

O66266 NADH oxidase (H2O2-forming) (EC 1.6.3.3) from Streptococcus mutans (see 3 papers)
    50% identity, 99% coverage of query (513 bits)

Build an alignment

Build an alignment for GFF1101 and 8 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

P16171 Mercuric reductase; Hg(II) reductase; EC 1.16.1.1 from Bacillus cereus
    22% identity, 80% coverage of query (44.7 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory