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Searching for up to 100 curated homologs for GFF1281 FitnessBrowser__Marino:GFF1281 (588 a.a.)

Found high-coverage hits (≥70%) to 10 curated proteins.

Removed hits that are identical to the query, leaving 9

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) from Pseudomonas stutzeri RCH2
    78% identity, 100% coverage of query (907 bits)

Shew_2371 actP-like component of L-lactate and L-malate uptake system from Shewanella loihica PV-4
    58% identity, 99% coverage of query (643 bits)

Sama_1523 actP-like component of lactate uptake system from Shewanella amazonensis SB2B
    57% identity, 100% coverage of query (628 bits)

Build an alignment

Build an alignment for GFF1281 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

TC 2.A.21.7.5 / D5APM1 Acetate permease ActP-2/ActP2/ActP3 from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
    29% identity, 87% coverage of query (159 bits)

Pf6N2E2_5849 large component of pyruvate transporter (actP-like) from Pseudomonas fluorescens FW300-N2E2
    28% identity, 85% coverage of query (145 bits)

YjcG / b4067 acetate/glycolate:cation symporter from Escherichia coli K-12 substr. MG1655 (see 2 papers)
actP / P32705 acetate/glycolate:cation symporter from Escherichia coli (strain K12) (see 5 papers)
ACTP_ECOLI / P32705 Cation/acetate symporter ActP; Acetate permease; Acetate transporter ActP from Escherichia coli (strain K12) (see 2 papers)
TC 2.A.21.7.2 / P32705 Acetate/glyoxylate permease, ActP from Escherichia coli (see 6 papers)
    27% identity, 83% coverage of query (143 bits)

Pf1N1B4_3673 large component of pyruvate transporter (actP-like) from Pseudomonas fluorescens FW300-N1B4
    28% identity, 85% coverage of query (143 bits)

PS417_08865 large component of pyruvate transporter (actP-like) from Pseudomonas simiae WCS417
    27% identity, 86% coverage of query (142 bits)

AZOBR_RS02940 large component of pyruvate transporter (actP-like) from Azospirillum brasilense Sp245
    28% identity, 89% coverage of query (139 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory