Sites on a Tree

 

Searching for up to 100 curated homologs for GFF1282 FitnessBrowser__Marino:GFF1282 (88 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Psest_0346 small component of pyruvate/D-alanine transporter (TIGR03647) from Pseudomonas stutzeri RCH2
    74% identity, 99% coverage of query (139 bits)

Sama_1522 small component of lactate uptake system from Shewanella amazonensis SB2B
    51% identity, 100% coverage of query (91.7 bits)

Shew_2372 small component of L-lactate and L-malate uptake system from Shewanella loihica PV-4
    49% identity, 100% coverage of query (89.4 bits)

Build an alignment

Build an alignment for GFF1282 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory