Searching for up to 100 curated homologs for GFF1383 FitnessBrowser__Phaeo:GFF1383 (434 a.a.)
Found high-coverage hits (≥70%) to 77 curated proteins.
Removed hits that are identical to the query, leaving 76
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
SMc03163 Xylose isomerase (EC 5.3.1.5) from Sinorhizobium meliloti 1021
71% identity, 100% coverage of query (657 bits)
BWI76_RS27025 Xylose isomerase (EC 5.3.1.5) from Klebsiella michiganensis M5al
60% identity, 100% coverage of query (541 bits)
XylA / b3565 xylose isomerase (EC 5.3.1.5) from Escherichia coli K-12 substr. MG1655 (see 38 papers)
xylA / P00944 xylose isomerase (EC 5.3.1.5) from Escherichia coli (strain K12) (see 36 papers)
XYLA_ECOLI / P00944 Xylose isomerase; D-xylulose keto-isomerase; EC 5.3.1.5 from Escherichia coli (strain K12) (see 2 papers)
xylA / GB|AAC76589.1 xylose isomerase; EC 5.3.1.5 from Escherichia coli K12 (see 2 papers)
59% identity, 100% coverage of query (541 bits)
C7G532 xylose isomerase (EC 5.3.1.5) from Vibrio sp. (see paper)
59% identity, 100% coverage of query (529 bits)
BPHYT_RS32825 Xylose isomerase (EC 5.3.1.5) from Burkholderia phytofirmans PsJN
58% identity, 99% coverage of query (526 bits)
PS417_10945 Xylose isomerase (EC 5.3.1.5) from Pseudomonas simiae WCS417
61% identity, 99% coverage of query (523 bits)
AO356_28500 Xylose isomerase (EC 5.3.1.5) from Pseudomonas fluorescens FW300-N2C3
60% identity, 99% coverage of query (504 bits)
D9SR73 xylose isomerase (EC 5.3.1.5) from Clostridium cellulovorans (see paper)
47% identity, 100% coverage of query (436 bits)
xylA / AAB06798.1 xylose isomerase from Thermotoga neapolitana (see paper)
48% identity, 100% coverage of query (429 bits)
Echvi_1876 Xylose isomerase (EC 5.3.1.5) from Echinicola vietnamensis KMM 6221, DSM 17526
48% identity, 99% coverage of query (427 bits)
1a0eA / P45687 Xylose isomerase from thermotoga neapolitana
47% identity, 100% coverage of query (427 bits)
1a0cA / P19148 Xylose isomerase from thermoanaerobacterium thermosulfurigenes
46% identity, 99% coverage of query (422 bits)
D2DK62 xylose isomerase (EC 5.3.1.5) from Thermoanaerobacter ethanolicus (see paper)
46% identity, 99% coverage of query (421 bits)
XYLA_THESA / P30435 Xylose isomerase; EC 5.3.1.5 from Thermoanaerobacterium saccharolyticum (see paper)
AAA03088.1 xylose isomerase from Thermoanaerobacterium saccharolyticum (see paper)
45% identity, 100% coverage of query (419 bits)
1a0dA / P54273 Xylose isomerase from bacillus stearothermophilus
48% identity, 99% coverage of query (417 bits)
xylA / AAA99461.1 xylose isomerase from Bacillus sp. (see paper)
48% identity, 99% coverage of query (416 bits)
xylA / AAC44473.1 xylose isomerase from Thermoanaerobacterium sp (see paper)
45% identity, 100% coverage of query (414 bits)
Q9P8C9 xylose isomerase (EC 5.3.1.5) from Piromyces sp. E2 (see paper)
48% identity, 98% coverage of query (412 bits)
5nh4A / Q9P8C9 Crystal structure of xylose isomerase from piromyces e2 in complex with one mg2+ ions and glycerol (see paper)
48% identity, 98% coverage of query (411 bits)
5nhcA Crystal structure of xylose isomerase from piromyces e2 in complex with two co2+ ions and xylulose
48% identity, 98% coverage of query (411 bits)
5nhaA Crystal structure of xylose isomerase from piromyces sp. E2 in complex with two mn2+ ions and sorbitol
48% identity, 98% coverage of query (411 bits)
5nh9A Crystal structure of xylose isomerase from piromyces e2 in complex with two mn2+ ions and xylose
48% identity, 98% coverage of query (411 bits)
5nh7A Crystal structure of xylose isomerase from piromyces e2 in complex with two mg2+ ions and xylose
48% identity, 98% coverage of query (411 bits)
5nh6A Crystal structure of xylose isomerase from piromyces e2 complexed with one mg2+ ion and xylitol
48% identity, 98% coverage of query (411 bits)
5nh5A Crystal structure of native xylose isomerase from piromyces e2
48% identity, 98% coverage of query (411 bits)
5yn3A Crystal structure of xylose isomerase from piromyces sp. E2
48% identity, 98% coverage of query (411 bits)
B7SLY1 xylose isomerase (EC 5.3.1.5) from Orpinomyces sp. (see 2 papers)
47% identity, 98% coverage of query (401 bits)
4xkmA / Q8A9M2 Crystal structure of xylose isomerase from an human intestinal tract microbe bacteroides thetaiotaomicron
49% identity, 99% coverage of query (396 bits)
Q8A9M2 xylose isomerase (EC 5.3.1.5) from Bacteroides thetaiotaomicron (see paper)
49% identity, 99% coverage of query (396 bits)
xylA / G2TH70 xylA (EC 5.3.1.5) from Weizmannia coagulans 36D1 (see paper)
45% identity, 100% coverage of query (395 bits)
6intA / A0A4V8H014 Xylose isomerase from paenibacillus sp. R4 (see paper)
44% identity, 99% coverage of query (382 bits)
XYLA_LEVBR / P29443 Xylose isomerase; EC 5.3.1.5 from Levilactobacillus brevis (Lactobacillus brevis) (see paper)
43% identity, 99% coverage of query (373 bits)
A1A0H0 xylose isomerase (EC 5.3.1.5) from Bifidobacterium adolescentis (see paper)
43% identity, 96% coverage of query (355 bits)
4j4kA Crystal structure of glucose isomerase
31% identity, 86% coverage of query (117 bits)
1oadA Glucose isomerase from streptomyces rubiginosus in p21212 crystal form
31% identity, 86% coverage of query (116 bits)
P24300 xylose isomerase (EC 5.3.1.5) from Streptomyces rubiginosus (see 8 papers)
4duoA / P24300 Room-temperature x-ray structure of d-xylose isomerase in complex with 2mg2+ ions and xylitol at ph 7.7 (see paper)
31% identity, 86% coverage of query (115 bits)
5y4iA Crystal structure of glucose isomerase in complex with glycerol in one metal binding mode
31% identity, 86% coverage of query (115 bits)
8awsA Millisecond cryo-trapping by the spitrobot crystal plunger, xylose isomerase with glucose at 50ms
31% identity, 86% coverage of query (115 bits)
3u3hA X-ray crystallographic analysis of d-xylose isomerase-catalyzed isomerization of (r)-glyceraldehyde
31% identity, 86% coverage of query (115 bits)
2g4jA Anomalous substructure of glucose isomerase
31% identity, 86% coverage of query (115 bits)
4e3vA Crystal structure of xylose isomerase from streptomyces rubiginosus cryoprotected in proline
31% identity, 86% coverage of query (115 bits)
3xisA A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 angstroms streptomyces rubiginosus structures with xylitol and d-xylose
31% identity, 86% coverage of query (115 bits)
4qehA Room temperature x-ray structure of d-xylose isomerase in complex with two mg2+ ions and l-ribose
31% identity, 86% coverage of query (115 bits)
4qeeA Room temperature x-ray structure of d-xylose isomerase in complex with two ni2+ ions and l-ribose
31% identity, 86% coverage of query (115 bits)
4qe4A Room temperature x-ray structure of d-xylose isomerase in complex with two ni2+ ions and l-ribulose
31% identity, 86% coverage of query (115 bits)
4qe1A Room temperature x-ray structure of d-xylose isomerase in complex with two cd2+ ions and l-ribulose
31% identity, 86% coverage of query (115 bits)
4qdwA Joint x-ray and neutron structure of streptomyces rubiginosus d-xylose isomerase in complex with two ni2+ ions and linear l-arabinose
31% identity, 86% coverage of query (115 bits)
4qdpA Joint x-ray and neutron structure of streptomyces rubiginosus d-xylose isomerase in complex with two cd2+ ions and cyclic beta-l-arabinose
31% identity, 86% coverage of query (115 bits)
3qzaA Joint neutron and x-ray structure of apo-d-xylose isomerase at ph=5.9
31% identity, 86% coverage of query (115 bits)
3kbnA Room temperature structure of d-xylose isomerase in complex with 2ni(2+) co-factors and d12-d-glucose in the linear form
31% identity, 86% coverage of query (115 bits)
3kbmA Room temperature x-ray structure of d-xylose isomerase complexed with 2cd(2+) co-factors and d12-d-alpha-glucose in the cyclic form
31% identity, 86% coverage of query (115 bits)
8awyA Millisecond cryo-trapping by the spitrobot crystal plunger, serial measurement xylose isomerase with 2,3-butanediol at 50ms
31% identity, 86% coverage of query (115 bits)
4zb0A A dehydrated form of glucose isomerase collected at room temperature.
31% identity, 86% coverage of query (115 bits)
1gw9A Tri-iodide derivative of xylose isomerase from streptomyces rubiginosus
30% identity, 86% coverage of query (115 bits)
1xiiA Modes of binding substrates and their analogues to the enzyme d-xylose isomerase
30% identity, 86% coverage of query (115 bits)
1xihA Modes of binding substrates and their analogues to the enzyme d-xylose isomerase
30% identity, 86% coverage of query (115 bits)
1xicA Modes of binding substrates and their analogues to the enzyme d-xylose isomerase
30% identity, 86% coverage of query (115 bits)
9xiaA X-ray analysis of d-xylose isomerase at 1.9 angstroms: native enzyme in complex with substrate and with a mechanism-designed inactivator
30% identity, 86% coverage of query (115 bits)
1xieA Modes of binding substrates and their analogues to the enzyme d-xylose isomerase
30% identity, 86% coverage of query (115 bits)
1xidA Modes of binding substrates and their analogues to the enzyme d-xylose isomerase
30% identity, 86% coverage of query (115 bits)
1xycA X-ray crystallographic structures of d-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis
30% identity, 86% coverage of query (111 bits)
1xybA X-ray crystallographic structures of d-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis
30% identity, 86% coverage of query (111 bits)
2gyiA Design, synthesis, and characterization of a potent xylose isomerase inhibitor, d-threonohydroxamic acid, and high-resolution x-ray crystallographic structure of the enzyme-inhibitor complex
30% identity, 86% coverage of query (111 bits)
1s5mA Xylose isomerase in substrate and inhibitor michaelis states: atomic resolution studies of a metal-mediated hydride shift
30% identity, 86% coverage of query (110 bits)
1muwA The 0.86 angstrom structure of xylose isomerase
30% identity, 86% coverage of query (110 bits)
Build an alignment for GFF1383 and 65 homologs with ≥ 30% identity
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1clkA Crystal structure of streptomyces diastaticus no.7 strain m1033 xylose isomerase at 1.9 a resolution with pseudo-i222 space group
29% identity, 86% coverage of query (108 bits)
P26997 xylose isomerase (EC 5.3.1.5) from Thermus thermophilus (see paper)
29% identity, 70% coverage of query (104 bits)
4xiaA Structures of d-xylose isomerase from arthrobacter strain b3728 containing the inhibitors xylitol and d-sorbitol at 2.5 angstroms and 2.3 angstroms resolution, respectively
31% identity, 70% coverage of query (102 bits)
1didA / P12070 Observations of reaction intermediates and the mechanism of aldose- ketose interconversion by d-xylose isomerase (see paper)
30% identity, 70% coverage of query (99.8 bits)
P12070 Xylose isomerase; EC 5.3.1.5 from Arthrobacter sp. (strain NRRL B3728)
30% identity, 70% coverage of query (99.8 bits)
1xllA Mechanism for aldose-ketose interconversion by d-xylose isomerase involving ring opening followed by a 1,2-hydride shift
30% identity, 70% coverage of query (99.8 bits)
1xliA Mechanism for aldose-ketose interconversion by d-xylose isomerase involving ring opening followed by a 1,2-hydride shift
30% identity, 70% coverage of query (99.8 bits)
1xlfA Mechanism for aldose-ketose interconversion by d-xylose isomerase involving ring opening followed by a 1,2-hydride shift
30% identity, 70% coverage of query (99.8 bits)
1xlcA Mechanism for aldose-ketose interconversion by d-xylose isomerase involving ring opening followed by a 1,2-hydride shift
30% identity, 70% coverage of query (99.8 bits)
1dieA Observations of reaction intermediates and the mechanism of aldose- ketose interconversion by d-xylose isomerase
30% identity, 70% coverage of query (99.8 bits)
6n98A / A0A1K2FZ20 Xylose isomerase 1f1 variant from streptomyces sp. F-1 (see paper)
28% identity, 78% coverage of query (82.8 bits)
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Lawrence Berkeley National Laboratory