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Searching for up to 100 curated homologs for GFF1479 FitnessBrowser__Phaeo:GFF1479 (218 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

aqpS / Q92R43 aquaglyceroporin from Rhizobium meliloti (strain 1021) (see 2 papers)
AQPS_RHIME / Q92R43 Aquaglyceroporin AqpS from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see 2 papers)
TC 1.A.8.12.10 / Q92R43 Arsenite export pore, AqpS (see paper)
    53% identity, 99% coverage of query (209 bits)

NIP2-1 / Q6Z2T3 aquaporin NIP2-1 from Oryza sativa subsp. japonica (see 7 papers)
NIP21_ORYSJ / Q6Z2T3 Aquaporin NIP2-1; Low silicon protein 1; NOD26-like intrinsic protein 2-1; OsNIP2;1; Silicon influx transporter LSI1 from Oryza sativa subsp. japonica (Rice) (see 6 papers)
TC 1.A.8.12.2 / Q6Z2T3 The silicon (silicic acid) (undissociated form) transporter, Lsi1 (Ma et al., 2007a, b; Mitani et al., 2008). The barley orthologue Lsi1 (also called NIP2-1) is also a silicon (silicic acid) uptake channel (Chiba et al., 2009). Rice Lsi1 also transports arsenite and pentavalent mono and dimethyl arsenite (Li et al., 2009). In addition to silicon (Si), selenite (Se) uptake is mediated by Lsi1, also called NIP2;1 from Oryza sativa (Rice) (see 6 papers)
NIP2-1 / GI|90855460 aquaporin NIP2-1 from Oryza sativa (japonica cultivar-group) (see paper)
    31% identity, 85% coverage of query (65.1 bits)

NIP32_ORYSJ / Q7EYH7 Aquaporin NIP3-2; NOD26-like intrinsic protein 3-2; OsNIP3;2 from Oryza sativa subsp. japonica (Rice) (see paper)
    35% identity, 71% coverage of query (62.0 bits)

NIP1 / CAD67694.1 Nod26-like protein from Cucurbita pepo (see paper)
    30% identity, 86% coverage of query (61.2 bits)

Build an alignment

Build an alignment for GFF1479 and 4 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory