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Searching for up to 100 curated homologs for GFF1742 FitnessBrowser__WCS417:GFF1742 (103 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf1N1B4_3672 small component of pyruvate transporter (yjcH-like) from Pseudomonas fluorescens FW300-N1B4
    93% identity, 100% coverage of query (194 bits)

Pf6N2E2_5848 small component of pyruvate transporter (yjcH-like) from Pseudomonas fluorescens FW300-N2E2
    88% identity, 100% coverage of query (189 bits)

b4068 required for glycolate transport, with actP from Escherichia coli BW25113
YjcH / b4068 DUF485 domain-containing inner membrane protein YjcH from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    59% identity, 98% coverage of query (124 bits)

AZOBR_RS02935 small component of pyruvate transporter (yjcH-like) from Azospirillum brasilense Sp245
    58% identity, 87% coverage of query (108 bits)

Build an alignment

Build an alignment for GFF1742 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory