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Searching for up to 100 curated homologs for GFF1892 FitnessBrowser__WCS417:GFF1892 (486 a.a.)

Found high-coverage hits (≥70%) to 17 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

rfbM / BAA07745.1 GDP-mannose pyrophosphorylase from Escherichia coli (see 2 papers)
    45% identity, 98% coverage of query (433 bits)

xanB / AAK53463.1 phosphomannose isomerase/GDP-D-mannose pyrophosphorylase from Xanthomonas campestris pv. campestris (see 4 papers)
    48% identity, 98% coverage of query (423 bits)

algA / P07874 phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
ALGA_PSEAE / P07874 Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
P07874 mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) from Pseudomonas aeruginosa (see 2 papers)
    44% identity, 97% coverage of query (421 bits)

epsQ / BAC55145.1 GDP-mannose pyrophosphorylase EpsQ from Methylobacillus sp. 12S (see paper)
    47% identity, 98% coverage of query (416 bits)

algA / GI|31296823 alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens (see 2 papers)
    43% identity, 98% coverage of query (406 bits)

PH0925 / O58649 GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see paper)
    44% identity, 97% coverage of query (399 bits)

RfbM / b2049 mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) from Escherichia coli K-12 substr. MG1655 (see 11 papers)
cpsB / P24174 mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) from Escherichia coli (strain K12) (see 11 papers)
    45% identity, 97% coverage of query (394 bits)

RFBM_SALTY / P26404 Mannose-1-phosphate guanylyltransferase RfbM; GDP-mannose pyrophosphorylase; GMP; GMPP; GTP--mannose-1-phosphate guanylyltransferase; EC 2.7.7.13 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
manC / CAA40128.1 mannose-1-phosphate guanylyltransferase (GDP) from Salmonella enterica (see 6 papers)
    43% identity, 96% coverage of query (394 bits)

MANC1_ECO57 / Q8X7P1 Mannose-1-phosphate guanylyltransferase 1; GDP-mannose pyrophosphorylase 1; GMP 1; GMPP 1; EC 2.7.7.13 from Escherichia coli O157:H7
    45% identity, 97% coverage of query (391 bits)

B4EMQ6 mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) from Burkholderia cenocepacia (see paper)
    44% identity, 97% coverage of query (388 bits)

MANC2_ECO57 / O85342 Mannose-1-phosphate guanylyltransferase 2; GDP-mannose pyrophosphorylase 2; GMP 2; GMPP 2; EC 2.7.7.13 from Escherichia coli O157:H7 (see paper)
    42% identity, 97% coverage of query (379 bits)

manC / AAC27538.1 ManC from Escherichia coli (see 6 papers)
    40% identity, 97% coverage of query (372 bits)

Q9X0C3 mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) from Thermotoga maritima (see paper)
    35% identity, 72% coverage of query (207 bits)

2x65A / Q9X0C3 Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with mannose-1-phosphate. (see paper)
    35% identity, 72% coverage of query (207 bits)

2x65B Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with mannose-1-phosphate.
    35% identity, 72% coverage of query (207 bits)

2x60A Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with gtp.
    35% identity, 71% coverage of query (206 bits)

2x5zA Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with gdp-mannose.
    35% identity, 71% coverage of query (206 bits)

Build an alignment

Build an alignment for GFF1892 and 17 homologs with ≥ 30% identity

Select sequences

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory