Searching for up to 100 curated homologs for GFF1918 FitnessBrowser__Phaeo:GFF1918 (414 a.a.)

Found high-coverage hits (≥70%) to 16 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SMc04259 ABC transporter for D-Cellobiose and D-Salicin, periplasmic substrate-binding protein from Sinorhizobium meliloti 1021
    39% identity, 91% coverage of query (276 bits)

Ac3H11_2062 glucose ABC transporter, substrate-binding component from Acidovorax sp. GW101-3H11
    37% identity, 90% coverage of query (266 bits)

8hqqA / Q4FMK2 Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
    38% identity, 91% coverage of query (263 bits)

5dviA / H7BRJ8 High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
    38% identity, 93% coverage of query (239 bits)

5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86
    38% identity, 93% coverage of query (239 bits)

4r2bA / A6X5L9 Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
    36% identity, 94% coverage of query (235 bits)

PfGW456L13_1894 ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component from Pseudomonas fluorescens GW456-L13
    35% identity, 98% coverage of query (216 bits)

TC 3.A.1.1.30 / Q88P38 GtsA (GLcE), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440) (see paper)
    36% identity, 95% coverage of query (205 bits)

PS417_22145 glucose/xylose ABC transporter, periplasmic substrate-binding component from Pseudomonas simiae WCS417
    35% identity, 93% coverage of query (189 bits)

TC 3.A.1.1.24 / Q72KX2 Glucose-binding protein aka TT_C0328, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (see paper)
    30% identity, 84% coverage of query (140 bits)

2b3bA / Q72KX2 Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
    30% identity, 81% coverage of query (133 bits)

2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose
    30% identity, 81% coverage of query (133 bits)

2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose
    30% identity, 81% coverage of query (133 bits)

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Build an alignment for GFF1918 and 13 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

TC 3.A.1.1.21 / Q9L027 BxlE, component of The xylobiose porter; BxlEFG(K) from Streptomyces coelicolor (see paper)
    26% identity, 74% coverage of query (77.8 bits)

XACG_HALVD / D4GP35 Xylose/arabinose-binding protein XacG from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
    24% identity, 78% coverage of query (63.2 bits)

4g68A / J9PBT4 Biochemical and structural insights into xylan utilization by the thermophilic bacteriumcaldanaerobius polysaccharolyticus (see paper)
    23% identity, 83% coverage of query (63.2 bits)

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