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Searching for up to 100 curated homologs for GFF2161 FitnessBrowser__WCS417:GFF2161 (334 a.a.)

Found high-coverage hits (≥70%) to 10 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf1N1B4_411 ABC transporter for D-galactose/L-arabinose, substrate-binding component from Pseudomonas fluorescens FW300-N1B4
    89% identity, 100% coverage of query (613 bits)

Pf6N2E2_5968 ABC transporter for D-galactose/L-arabinose, substrate-binding component from Pseudomonas fluorescens FW300-N2E2
    86% identity, 100% coverage of query (588 bits)

AraF / b1901 arabinose ABC transporter periplasmic binding protein (EC 7.5.2.13; EC 7.5.2.12) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
AraF / P02924 arabinose ABC transporter periplasmic binding protein (EC 7.5.2.13) from Escherichia coli (strain K12) (see 2 papers)
ARAF_ECOLI / P02924 L-arabinose-binding periplasmic protein; ABP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.2.2 / P02924 AraF aka B1901, component of Arabinose porter from Escherichia coli (see 10 papers)
    58% identity, 96% coverage of query (368 bits)

1abeA / P02924 Novel stereospecificity of the l-arabinose-binding protein (see paper)
    60% identity, 90% coverage of query (362 bits)

5abpA Substrate specificity and affinity of a protein modulated by bound water molecules
    60% identity, 90% coverage of query (362 bits)

1abfA Substrate specificity and affinity of a protein modulated by bound water molecules
    60% identity, 90% coverage of query (362 bits)

BPHYT_RS16935 D-galactose ABC transporter, substrate-binding component from Burkholderia phytofirmans PsJN
    48% identity, 99% coverage of query (296 bits)

4kzkA / Q2T607 The structure of the periplasmic l-arabinose binding protein from burkholderia thailandensis
    43% identity, 90% coverage of query (251 bits)

Build an alignment

Build an alignment for GFF2161 and 8 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

PS417_18405 D-ribose ABC transporter, substrate-binding component RbsB from Pseudomonas simiae WCS417
    24% identity, 70% coverage of query (51.6 bits)

RALBP_PSEAE / Q9I2F8 D-ribose/D-allose-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
    26% identity, 81% coverage of query (48.1 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory