Searching for up to 100 curated homologs for GFF2182 FitnessBrowser__Phaeo:GFF2182 (545 a.a.)
Found high-coverage hits (≥70%) to 27 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
TC 3.A.1.5.17 / Q92NE8 PrbD, component of The proline betaine uptake porter from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
66% identity, 99% coverage of query (731 bits)
GsiA / b0829 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
gsiA / P75796 glutathione ABC transporter ATP binding subunit GsiA (EC 7.4.2.10) from Escherichia coli (strain K12) (see 3 papers)
GSIA_ECOLI / P75796 Glutathione import ATP-binding protein GsiA; EC 7.4.2.10 from Escherichia coli (strain K12) (see paper)
P75796 ABC-type glutathione transporter (EC 7.4.2.10) from Escherichia coli (see paper)
TC 3.A.1.5.11 / P75796 Hypothetical ABC transporter ATP-binding protein yliA, component of Glutathione porter, YliABCD or GsiABCD from Escherichia coli (see 4 papers)
37% identity, 91% coverage of query (340 bits)
Q8ZQM4 ABC-type glutathione transporter (EC 7.4.2.10) from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
37% identity, 91% coverage of query (339 bits)
TC 3.A.1.5.23 / Q9F9T4 EppD, component of The Ethylene diamine tetraacetate (EDTA) uptake porter, EppABCD (see 2 papers)
36% identity, 96% coverage of query (307 bits)
SM_b21644 ABC transporter for D-Raffinose, ATPase component from Sinorhizobium meliloti 1021
35% identity, 92% coverage of query (295 bits)
TC 3.A.1.5.24 / Q8ZNJ8 YejF, component of The antimicrobial peptide (protamine, melittin, polymyxin B, human defensin (HBD)-1 and HBD-2 exporter, YejABEF (Eswarappa et al., 2008). Prefers N-formyl methionine peptides, such as Microcin C (of prokaryotic origin) to non formylated peptides (of eukaryotic origin) from Salmonella typhimurium (see paper)
34% identity, 96% coverage of query (289 bits)
YejF / b2180 putative oligopeptide ABC transporter ATP binding subunit YejF (EC 7.4.2.6) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
YejF / P33916 putative oligopeptide ABC transporter ATP binding subunit YejF (EC 7.4.2.6) from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.5.21 / P33916 YejF, component of The Microcin C/peptide uptake porter, YejABEF from Escherichia coli (strain K12) (see 3 papers)
yejF / RF|NP_416685 uncharacterized ABC transporter ATP-binding protein yejF from Escherichia coli K12 (see paper)
34% identity, 90% coverage of query (270 bits)
Build an alignment for GFF2182 and 7 homologs with ≥ 30% identity
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RbsA / b3749 ribose ABC transporter ATP binding subunit from Escherichia coli K-12 substr. MG1655 (see 5 papers)
RbsA / P04983 ribose ABC transporter ATP binding subunit from Escherichia coli (strain K12) (see 2 papers)
RBSA_ECOLI / P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.2.1 / P04983 RbsA aka B3749, component of Ribose porter from Escherichia coli (see 6 papers)
rbsA / GB|AAC76772.1 ribose transport, ATP-binding protein RbsA; EC 3.6.3.17 from Escherichia coli K12 (see 7 papers)
25% identity, 87% coverage of query (119 bits)
3bk7A / Q9UZA4 Structure of the complete abce1/rnaase-l inhibitor protein from pyrococcus abysii (see paper)
24% identity, 86% coverage of query (102 bits)
1yqtA Rnase-l inhibitor
26% identity, 86% coverage of query (101 bits)
5yv5A Crystal structure of the complex of archaeal ribosomal stalk protein ap1 and archaeal ribosome recycling factor aabce1.
26% identity, 86% coverage of query (100 bits)
6zvj1 of a human ABCE1-bound 43S pre-initiation complex - State II
25% identity, 84% coverage of query (95.1 bits)
YHES_ECOL6 / A0A0H2VBH0 Probable ATP-binding protein YheS from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
23% identity, 86% coverage of query (94.7 bits)
P63389 Probable ATP-binding protein YheS from Escherichia coli (strain K12)
23% identity, 86% coverage of query (94.7 bits)
3ozxA Crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
25% identity, 85% coverage of query (94.0 bits)
P0A9U3 Probable ATP-binding protein YbiT from Escherichia coli (strain K12)
24% identity, 89% coverage of query (91.3 bits)
YbiT / b0820 putative ATP-binding protein YbiT from Escherichia coli K-12 substr. MG1655 (see 7 papers)
YBIT_ECOL6 / P0A9U4 Probable ATP-binding protein YbiT from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
ybiT / MB|P0A9U3 uncharacterized ABC transporter ATP-binding protein ybiT from Escherichia coli K12 (see 2 papers)
24% identity, 89% coverage of query (91.3 bits)
3jagjj of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
25% identity, 84% coverage of query (90.5 bits)
5ll6h Structure of the 40s abce1 post-splitting complex in ribosome recycling and translation initiation
25% identity, 84% coverage of query (88.6 bits)
8cask / Q03195 Cryo-em structure of native otu2-bound ubiquitinated 48s initiation complex (partial) (see paper)
24% identity, 84% coverage of query (87.0 bits)
ABCE1_HUMAN / P61221 ATP-binding cassette sub-family E member 1; 2'-5'-oligoadenylate-binding protein; HuHP68; RNase L inhibitor; Ribonuclease 4 inhibitor; RNS4I; EC 3.6.5.- from Homo sapiens (Human) (see 8 papers)
ABCE1_MOUSE / P61222 ATP-binding cassette sub-family E member 1; RNase L inhibitor; Ribonuclease 4 inhibitor; RNS4I; EC 3.6.5.- from Mus musculus (Mouse) (see paper)
25% identity, 84% coverage of query (85.5 bits)
6yalk Mammalian 48s late-stage initiation complex with beta-globin mRNA
25% identity, 84% coverage of query (85.5 bits)
7o80Bz / G1SG72 7o80Bz (see paper)
25% identity, 84% coverage of query (85.5 bits)
RLI1_YEAST / Q03195 Translation initiation factor RLI1; ATP-binding cassette sub-family E member RLI1; RNase L inhibitor from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 6 papers)
4crmP / Q03195 Cryo-em of a pre-recycling complex with erf1 and abce1 (see paper)
24% identity, 84% coverage of query (83.2 bits)
3j16B Models of ribosome-bound dom34p and rli1p and their ribosomal binding partners
24% identity, 84% coverage of query (83.2 bits)
ABCE1_DROME / Q9VSS1 Protein Pixie; ATP-binding cassette sub-family E member 1 from Drosophila melanogaster (Fruit fly) (see 5 papers)
24% identity, 84% coverage of query (82.8 bits)
4f4cA / P34712 The crystal structure of the multi-drug transporter (see paper)
26% identity, 77% coverage of query (79.7 bits)
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Lawrence Berkeley National Laboratory