Sites on a Tree

 

Searching for up to 100 curated homologs for GFF2249 HP15_2199 glucose/sorbosone dehydrogenase (511 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

hcuB / BAC81751.1 hydrophobic compound transport factor from Pseudomonas aeruginosa (see paper)
    45% identity, 70% coverage of query (279 bits)

YliI / b0837 aldose sugar dehydrogenase YliI from Escherichia coli K-12 substr. MG1655 (see 5 papers)
yliI / P75804 aldose sugar dehydrogenase YliI from Escherichia coli (strain K12) (see 5 papers)
YLII_ECOLI / P75804 Aldose sugar dehydrogenase YliI; Asd; Soluble aldose sugar dehydrogenase YliI; EC 1.1.5.- from Escherichia coli (strain K12) (see 2 papers)
    42% identity, 71% coverage of query (272 bits)

Build an alignment

Build an alignment for GFF2249 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

sndH / Q402A8 L-sorbosone dehydrogenase 1 from Ketogulonicigenium vulgare (see paper)
    29% identity, 70% coverage of query (122 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory