Sites on a Tree

 

Searching for up to 100 curated homologs for GFF2329 FitnessBrowser__psRCH2:GFF2329 (327 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

8bftA / P30177 The e. Coli trpd2 protein ybib in complex with a c-terminal peptide from obge (see paper)
    32% identity, 72% coverage of query (118 bits)

YbiB / b0800 nonspecific DNA-binding protein YbiB from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    32% identity, 72% coverage of query (117 bits)

Build an alignment

Build an alignment for GFF2329 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

trpD / AAB39009.1 anthranilate phosphoribosyltransferase from Bradyrhizobium japonicum (see paper)
    28% identity, 70% coverage of query (62.4 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory