Searching for up to 100 curated homologs for GFF2540 FitnessBrowser__WCS417:GFF2540 (273 a.a.)
Found high-coverage hits (≥70%) to 12 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
TC 3.A.1.17.2 / O85765 SsuC, component of Aromatic sulfonate porter from Pseudomonas putida (see paper)
40% identity, 92% coverage of query (186 bits)
SsuC / b0934 aliphatic sulfonate ABC transporter membrane subunit (EC 7.6.2.14) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
SsuC / P75851 aliphatic sulfonate ABC transporter membrane subunit (EC 7.6.2.14) from Escherichia coli (strain K12) (see 5 papers)
TC 3.A.1.17.10 / P75851 Putative aliphatic sulfonates transport permease protein SsuC, component of Aliphatic sulfonate (alkanesulfonate) import permease, SsuABC (YcbOEM) and is regluated by the transcriptional activator, Cbl from Escherichia coli (strain K12)
42% identity, 91% coverage of query (171 bits)
TauC / b0367 taurine ABC transporter membrane subunit (EC 7.6.2.7) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
TauC / Q47539 taurine ABC transporter membrane subunit (EC 7.6.2.7) from Escherichia coli (strain K12) (see 2 papers)
TAUC_ECOLI / Q47539 Taurine transport system permease protein TauC from Escherichia coli (strain K12) (see paper)
TC 3.A.1.17.1 / Q47539 TauC aka SSIC aka B0367, component of Taurine (2-aminoethane sulfonate) porter from Escherichia coli (see 4 papers)
35% identity, 80% coverage of query (129 bits)
RIBX_CHLAA / A9WGD1 Riboflavin transport system permease protein RibX from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (see paper)
TC 3.A.1.17.14 / A9WGD1 Riboflavin transport system permease protein RibX, component of Riboflavin uptake porter, RibXY (RibX, 168 aas and 6 TMSs; RibY, 351 aas) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
33% identity, 93% coverage of query (124 bits)
TC 3.A.1.17.4 / Q2BM70 Putative taurine uptake ABC transporter permease protein, component of The taurine uptake system, TauABC from Neptuniibacter caesariensis
31% identity, 87% coverage of query (113 bits)
CMPB_SYNE7 / Q55106 Bicarbonate transport system permease protein CmpB from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) (Anacystis nidulans R2) (see paper)
TC 3.A.1.16.3 / Q55106 CmpB, component of Bicarbonate porter (activated by low [CO2] mediated by CmpR; (Nishimura et al., 2008)) (see 2 papers)
33% identity, 71% coverage of query (111 bits)
Ac3H11_2561 ABC transporter for L-Histidine, permease component 2 from Acidovorax sp. GW101-3H11
33% identity, 73% coverage of query (100 bits)
Build an alignment for GFF2540 and 7 homologs with ≥ 30% identity
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TC 3.A.1.16.4 / Q8YRV7 ABC nitrate transport permease protein, component of Nitrate uptake system, NrtABCD from Nostoc sp. (strain PCC 7120 / UTEX 2576) (see paper)
27% identity, 78% coverage of query (94.7 bits)
NRTB_SYNE7 / P38044 Nitrate import permease protein NrtB from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) (Anacystis nidulans R2) (see paper)
TC 3.A.1.16.1 / P38044 NrtB, component of Four component nitrate/nitrite porter (see paper)
32% identity, 70% coverage of query (93.6 bits)
TC 3.A.1.17.5 / C0LZR8 OphG, component of The phthalate uptake system, OphFGH from Burkholderia cepacia
30% identity, 92% coverage of query (86.7 bits)
OPUCB_LISM4 / G2JZ43 Carnitine transport permease protein OpuCB from Listeria monocytogenes serotype 1/2a (strain 10403S) (see 4 papers)
OPUCB_LISMN / Q9KHT8 Carnitine transport permease protein OpuCB from Listeria monocytogenes (see paper)
27% identity, 74% coverage of query (74.3 bits)
OUSW_DICD3 / E0SCY2 Glycine betaine/choline transport system permease protein OusW from Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)) (see paper)
27% identity, 84% coverage of query (60.5 bits)
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Lawrence Berkeley National Laboratory