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Searching for up to 100 curated homologs for GFF2570 FitnessBrowser__Marino:GFF2570 (346 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

EpmB / b4146 lysine 2,3-aminomutase from Escherichia coli K-12 substr. MG1655 (see 6 papers)
epmB / P39280 lysine 2,3-aminomutase from Escherichia coli (strain K12) (see 5 papers)
EPMB_ECOLI / P39280 L-lysine 2,3-aminomutase; LAM; EF-P post-translational modification enzyme B; EC 5.4.3.- from Escherichia coli (strain K12) (see 4 papers)
    53% identity, 94% coverage of query (347 bits)

EPMB_SALTY / Q8ZKB8 L-lysine 2,3-aminomutase; LAM; EF-P post-translational modification enzyme B; EC 5.4.3.- from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
    51% identity, 94% coverage of query (337 bits)

2a5hB / Q9XBQ8 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from clostridium subterminale sb4, with michaelis analog (l-alpha-lysine external aldimine form of pyridoxal-5'-phosphate). (see paper)
    33% identity, 95% coverage of query (184 bits)

kamA / Q9XBQ8 lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale (see 4 papers)
KAMA_CLOSU / Q9XBQ8 L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale (see 6 papers)
    33% identity, 95% coverage of query (184 bits)

KAMA_FUSNN / Q8RHX4 L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) (see paper)
    30% identity, 96% coverage of query (171 bits)

ABLA_METMP / Q6LYX4 L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanococcus maripaludis (strain S2 / LL) (see paper)
Q6LYX4 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanococcus maripaludis (see paper)
    34% identity, 77% coverage of query (162 bits)

G3F9W8 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanocalculus chunghsingensis (see paper)
    34% identity, 77% coverage of query (159 bits)

Build an alignment

Build an alignment for GFF2570 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

A0A0K0QCW0 lysine 2,3-aminomutase (EC 5.4.3.2) from Bacillus thuringiensis serovar kurstaki (see paper)
    28% identity, 95% coverage of query (152 bits)

KAMA_BACSU / O34676 L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Bacillus subtilis (strain 168) (see 2 papers)
    31% identity, 92% coverage of query (150 bits)

ABLA_METMA / Q8PYC9 L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia) (see paper)
Q8PYC9 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanosarcina mazei (see 2 papers)
    29% identity, 95% coverage of query (145 bits)

blsG / Q841K7 L-arginine 2,3 aminomutase from Streptomyces griseochromogenes (see paper)
    29% identity, 92% coverage of query (144 bits)

G3F9X2 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanohalophilus portucalensis (see paper)
    33% identity, 77% coverage of query (142 bits)

kamA / Q185C5 glutamate 2,3-aminomutase (EC 5.4.3.9) from Clostridioides difficile (strain 630) (see paper)
EAM_CLOD6 / Q185C5 Glutamate 2,3-aminomutase; EC 5.4.3.9 from Clostridioides difficile (strain 630) (Peptoclostridium difficile) (see paper)
    31% identity, 96% coverage of query (140 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory