Sites on a Tree

 

Searching for up to 100 curated homologs for GFF2592 FitnessBrowser__psRCH2:GFF2592 (245 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PA3004 / Q9HZK1 S-methyl-5'-thioinosine phosphorylase monomer (EC 2.4.2.44) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
MTIP_PSEAE / Q9HZK1 S-methyl-5'-thioinosine phosphorylase; 5'-methylthioinosine phosphorylase; MTI phosphorylase; MTIP; EC 2.4.2.44 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
Q9HZK1 S-methyl-5'-thioinosine phosphorylase (EC 2.4.2.44) from Pseudomonas aeruginosa (see paper)
    78% identity, 100% coverage of query (391 bits)

3ozbA / Q9HZK1 Crystal structure of 5'-methylthioinosine phosphorylase from psedomonas aeruginosa in complex with hypoxanthine (see paper)
    77% identity, 100% coverage of query (379 bits)

TK1482 / Q5JJB8 guanosine phosphorylase (EC 2.4.2.15) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (see paper)
PNPH_THEKO / Q5JJB8 Probable 6-oxopurine nucleoside phosphorylase; Purine nucleoside phosphorylase; PNP; EC 2.4.2.1 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
    40% identity, 99% coverage of query (194 bits)

PNPH_PYRFU / Q8U2I1 6-oxopurine nucleoside phosphorylase; Purine nucleoside phosphorylase; PNP; PfPNP; EC 2.4.2.1 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see 2 papers)
Q8U2I1 purine-nucleoside phosphorylase (EC 2.4.2.1) from Pyrococcus furiosus (see 2 papers)
    42% identity, 100% coverage of query (189 bits)

MTAP_SACS2 / Q97W94 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPII; EC 2.4.2.28 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 2 papers)
Q97W94 purine-nucleoside phosphorylase (EC 2.4.2.1); S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Saccharolobus solfataricus (see 3 papers)
3t94A / Q97W94 Crystal structure of 5'-deoxy-5'-methylthioadenosine phosphorylase (mtap) ii complexed with 5'-deoxy-5'-methylthioadenosine and sulfate (see paper)
    38% identity, 96% coverage of query (166 bits)

1wtaA / Q9YAQ8 Crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum pernix (r32 form)
    39% identity, 98% coverage of query (164 bits)

MTAP_PYRFU / Q8U4Q8 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; PfMTAP; EC 2.4.2.28 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see 3 papers)
Q8U4Q8 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Pyrococcus furiosus (see paper)
    37% identity, 100% coverage of query (159 bits)

flB / Q1EMV9 5'-fluoro-5'-deoxy-adenosine phosphorylase (EC 2.4.2.1) from Streptantibioticus cattleyicolor (see paper)
flB / CAJ20005.1 5'-fluoro-5'-deoxy-adenosine phosphorylase from Streptomyces cattleya (see paper)
    44% identity, 83% coverage of query (151 bits)

C6KFA4 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from uncultured bacterium (see paper)
    42% identity, 84% coverage of query (150 bits)

4gljA / C6KFA4 Crystal structure of methylthioadenosine phosphorylase in complex with rhodamine b (see paper)
    42% identity, 84% coverage of query (150 bits)

MTAP_RHORT / Q2RXH9 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; EC 2.4.2.28 from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) (see 2 papers)
    38% identity, 84% coverage of query (147 bits)

pnp / Q5JEQ6 adenosine phosphorylase (EC 2.4.2.1) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (see paper)
MTAP_THEKO / Q5JEQ6 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; Nucleoside phosphorylase; EC 2.4.2.28 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
    34% identity, 98% coverage of query (147 bits)

MTAP_MYCS2 / A0QR54 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; EC 2.4.2.28 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
    42% identity, 87% coverage of query (147 bits)

salT / B0L7E7 chloro-purine nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica (see paper)
B0L7E7 purine-nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica (see paper)
    41% identity, 98% coverage of query (145 bits)

5f76A Crystal structure of mutant s12t of adenosine/methylthioadenosine phosphorylase from schistosoma mansoni in complex with methylthioadenosine
    38% identity, 83% coverage of query (144 bits)

I0B503 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Schistosoma mansoni (see paper)
    37% identity, 86% coverage of query (142 bits)

5f7jB / I0B503 Crystal structure of mutant n87t of adenosine/methylthioadenosine phosphorylase from schistosoma mansoni in complex with adenine (see paper)
    36% identity, 86% coverage of query (140 bits)

4l5aA Methylthioadenosine phosphorylase from schistosoma mansoni in complex with tubercidin
    36% identity, 89% coverage of query (140 bits)

MTAP_MYCTU / O06401 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; EC 2.4.2.28 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
O06401 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Mycobacterium tuberculosis (see paper)
    40% identity, 87% coverage of query (137 bits)

1sd2A Structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase complexed with 5'-methylthiotubercidin
    30% identity, 98% coverage of query (133 bits)

MTAP / Q13126 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Homo sapiens (see 5 papers)
MTAP_HUMAN / Q13126 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPase; EC 2.4.2.28 from Homo sapiens (Human) (see 6 papers)
Q13126 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Homo sapiens (see 8 papers)
    30% identity, 98% coverage of query (132 bits)

5tc5A / Q13126 Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with butylthio-dadme-immucillin-a and chloride
    30% identity, 98% coverage of query (132 bits)

Q9CQ65 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Mus musculus (see paper)
    34% identity, 83% coverage of query (132 bits)

6dz0A Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3r,4s)-1-((4-amino-5h-pyrrolo[3,2- d]pyrimidin-7-yl)methyl)-4-((pent-4-yn-1-ylthio)methyl)pyrrolidin-3- ol
    30% identity, 98% coverage of query (132 bits)

5eubA Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with 2-amino-mta and sulfate
    30% identity, 98% coverage of query (132 bits)

6dz3A Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3r,4s)-1-((4-amino-5h-pyrrolo[3,2- d]pyrimidin-7-yl)methyl)-4-(((3-(1-butyl-1h-1,2,3-triazol-4-yl) propyl)thio)methyl)pyrrolidin-3-ol
    30% identity, 98% coverage of query (132 bits)

6dyzA Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3r,4s)-1-((4-amino-5h-pyrrolo[3,2- d]pyrimidin-7-yl)methyl)-4-((prop-2-yn-1-ylthio)methyl)pyrrolidin-3- ol
    30% identity, 98% coverage of query (132 bits)

5tc8A Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with methylthio-dadme-immucillin-a
    30% identity, 98% coverage of query (132 bits)

5tc6A Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with propylthio-immucillin-a
    30% identity, 98% coverage of query (132 bits)

3ozcA Crystal structure of human 5'-deoxy-5'-methyladenosine phosphorylase in complex with pcl-phenylthiodadmeimma
    30% identity, 98% coverage of query (132 bits)

1sd1A Structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase complexed with formycin a
    30% identity, 98% coverage of query (132 bits)

1cg6A Structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase complexed with 5'-deoxy-5'-methylthioadenosine and sulfate at 1.7 a resolution
    30% identity, 98% coverage of query (132 bits)

1cb0A Structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase at 1.7 a resolution
    30% identity, 98% coverage of query (132 bits)

1k27A Crystal structure of 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with a transition state analogue
    30% identity, 98% coverage of query (131 bits)

MTAP_DROME / Q9V813 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPase; EC 2.4.2.28 from Drosophila melanogaster (Fruit fly) (see paper)
    32% identity, 83% coverage of query (126 bits)

6dz2A Crystal structure of human 5'-deoxy-5'-methylthioadenosine phosphorylase in complex with (3r,4s)-1-((4-amino-5h-pyrrolo[3,2- d]pyrimidin-7-yl)methyl)-4-(((3-(1-benzyl-1h-1,2,3-triazol-4-yl) propyl)thio)methyl)pyrrolidin-3-ol
    30% identity, 98% coverage of query (125 bits)

MTAP_BOVIN / Q3MHF7 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPase; EC 2.4.2.28 from Bos taurus (Bovine) (see paper)
    30% identity, 98% coverage of query (123 bits)

MTAP_SCHPO / Q09816 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPase; EC 2.4.2.28 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    34% identity, 83% coverage of query (103 bits)

MTAP_YEAST / Q07938 S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPase; Multicopy enhancer of UAS2; EC 2.4.2.28 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 5 papers)
    31% identity, 82% coverage of query (99.0 bits)

4uc0A / B9JYS2 Crystal structure of a purine nucleoside phosphorylase (psi-nysgrc- 029736) from agrobacterium vitis
    32% identity, 85% coverage of query (63.2 bits)

Build an alignment

Build an alignment for GFF2592 and 40 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

3fnqA Crystal structure of schistosoma purine nucleoside phosphorylase in complex with hypoxanthine
    28% identity, 83% coverage of query (62.4 bits)

3f8wA Crystal structure of schistosoma mansoni purine nucleoside phosphorylase in complex with adenosine
    28% identity, 83% coverage of query (62.4 bits)

3e9zA Crystal structure of purine nucleoside phosphorylase from schistosoma mansoni in complex with 6-chloroguanine
    28% identity, 83% coverage of query (62.4 bits)

3djfA Crystal structure of schistosoma mansoni purine nucleoside phosphorylase in a complex with bcx-34
    28% identity, 83% coverage of query (62.4 bits)

3fazA Crystal structure of schistosoma mansoni purine nucleoside phosphorylase in complex with inosine
    28% identity, 83% coverage of query (62.4 bits)

1tcuA Crystal structure of the purine nucleoside phosphorylase from schistosoma mansoni in complex with phosphate and acetate
    28% identity, 83% coverage of query (62.4 bits)

3fb1A Crystal structure of purine nucleoside phosphorylase in complex with ribose-1-phosphate
    28% identity, 83% coverage of query (62.4 bits)

1tcvA Crystal structure of the purine nucleoside phosphorylase from schistosoma mansoni in complex with non-detergent sulfobetaine 195 and acetate
    28% identity, 83% coverage of query (62.4 bits)

3e9rB Crystal structure of purine nucleoside phosphorylase from schistosoma mansoni in complex with adenine
    28% identity, 83% coverage of query (61.6 bits)

3iexA Schistosoma purine nucleoside phosphorylase in complex with guanosine
    28% identity, 72% coverage of query (59.7 bits)

Q9BMI9 purine-nucleoside phosphorylase (EC 2.4.2.1) from Schistosoma mansoni (see 2 papers)
    28% identity, 83% coverage of query (59.3 bits)

3e0qC / Q9BMI9 Crystal structure of schistosoma mansoni purine nucleoside phosphorylase complexed with a novel monocyclic inhibitor (see paper)
    28% identity, 83% coverage of query (59.3 bits)

7zsqC / P9WP01 Human purine nucleoside phosphorylase in complex with js-555 (see paper)
    30% identity, 86% coverage of query (59.3 bits)

7zsqB Human purine nucleoside phosphorylase in complex with js-555
    30% identity, 86% coverage of query (59.3 bits)

8c25A Purine nucleoside phosphorylase in complex with js-375
    30% identity, 86% coverage of query (59.3 bits)

7zsrA Purine nucleoside phosphorylase in complex with js-379
    30% identity, 86% coverage of query (59.3 bits)

7zsqA Human purine nucleoside phosphorylase in complex with js-555
    30% identity, 86% coverage of query (59.3 bits)

3ix2A Crystal structure of purine nucleoside phosphorylase from mycobacterium tuberculosis in complex with acyclovir
    30% identity, 86% coverage of query (59.3 bits)

3iomA Crystal structure of purine nucleoside phosphorylase from mycobacterium tuberculosis in complex with 2'-deoxyguanosine
    30% identity, 86% coverage of query (59.3 bits)

1n3iA Crystal structure of mycobacterium tuberculosis pnp with transition state analog dadme-immh
    30% identity, 86% coverage of query (59.3 bits)

1g2oA Crystal structure of purine nucleoside phosphorylase from mycobacterium tuberculosis in complex with a transition-state inhibitor
    30% identity, 86% coverage of query (59.3 bits)

1i80A Crystal structure of m. Tuberculosis pnp in complex with iminoribitol, 9-deazahypoxanthine and phosphate ion
    30% identity, 86% coverage of query (59.3 bits)

P9WP01 Purine nucleoside phosphorylase; PNP; Pu-NPase; Inosine phosphorylase; Inosine-guanosine phosphorylase; EC 2.4.2.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
    30% identity, 86% coverage of query (59.3 bits)

3sczA Combining crystallographic, thermodynamic, and molecular dynamics studies of mycobacterium tuberculosis purine nucleoside phosphorylase
    30% identity, 86% coverage of query (59.3 bits)

7zslA Human purine nucleoside phosphorylase in complex with js-196
    27% identity, 96% coverage of query (57.4 bits)

8swtA / Q5LAA3 Structure of bacteroides fragilis pnp bound to transition state analog immucillin h and sulfate (see paper)
    25% identity, 98% coverage of query (56.2 bits)

4lnaA / D2QIK7 Crystal structure of purine nucleoside phosphorylase i from spirosoma linguale dsm 74, nysgrc target 029362
    28% identity, 83% coverage of query (53.9 bits)

4earA Crystal structure of purine nucleoside phosphorylase (w16y, w94y, w178y, h257w) mutant from human complexed with dadme-immg and phosphate
    25% identity, 96% coverage of query (52.4 bits)

7zsmA Human purine nucleoside phosphorylase in complex with js-375
    26% identity, 96% coverage of query (51.2 bits)

7zspA Human purine nucleoside phosphorylase in complex with js-555
    26% identity, 96% coverage of query (51.2 bits)

7zsnA Human purine nucleoside phosphorylase in complex with js-379
    26% identity, 96% coverage of query (51.2 bits)

PNP / P00491 purine nucleoside phosphorylase subunit (EC 2.4.2.1; EC 2.4.2.15) from Homo sapiens (see 9 papers)
PNPH_HUMAN / P00491 Purine nucleoside phosphorylase; PNP; Inosine phosphorylase; Inosine-guanosine phosphorylase; EC 2.4.2.1 from Homo sapiens (Human) (see 6 papers)
P00491 purine-nucleoside phosphorylase (EC 2.4.2.1) from Homo sapiens (see 29 papers)
    26% identity, 96% coverage of query (50.8 bits)

7zsoA Human purine nucleoside phosphorylase in complex with js-554
    26% identity, 96% coverage of query (50.8 bits)

3k8qA Crystal structure of human purine nucleoside phosphorylase in complex with serme-immucillin h
    25% identity, 96% coverage of query (50.8 bits)

1rszA Structure of human purine nucleoside phosphorylase in complex with dadme-immucillin-h and sulfate
    25% identity, 96% coverage of query (50.8 bits)

3d1vA / P00491 Crystal structure of human pnp complexed with 2-mercapto(3h) quinazolinone (see paper)
    25% identity, 96% coverage of query (50.4 bits)

3k8oE Crystal structure of human purine nucleoside phosphorylase in complex with datme-immh
    25% identity, 96% coverage of query (50.4 bits)

3phbE Crystal structure of human purine nucleoside phosphorylase in complex with dadme-immg
    25% identity, 96% coverage of query (50.4 bits)

3inyA Crystal structure of human purine nucleoside phosphorylase in complex with 7-deazaguanine
    25% identity, 96% coverage of query (50.4 bits)

1yryE Crystal structure of human pnp complexed with mesg
    25% identity, 96% coverage of query (50.4 bits)

1v45E Crystal structure of human pnp complexed with 3-deoxyguanosine
    25% identity, 96% coverage of query (50.4 bits)

1v41E Crystal structure of human pnp complexed with 8-azaguanine
    25% identity, 96% coverage of query (50.4 bits)

1v3qE Structure of human pnp complexed with ddi
    25% identity, 96% coverage of query (50.4 bits)

1v2hE Crystal structure of human pnp complexed with guanine
    25% identity, 96% coverage of query (50.4 bits)

1rfgE Crystal structure of human purine nucleoside phosphorylase complexed with guanosine
    25% identity, 96% coverage of query (50.4 bits)

1rctE Crystal structure of human purine nucleoside phosphorylase complexed with inosine
    25% identity, 96% coverage of query (50.4 bits)

1pwyE Crystal structure of human pnp complexed with acyclovir
    25% identity, 96% coverage of query (50.4 bits)

1pf7E Crystal structure of human pnp complexed with immucillin h
    25% identity, 96% coverage of query (50.4 bits)

1v48A Calf spleen purine nucleoside phosphorylase (pnp) binary complex with 9-(5,5-difluoro-5-phosphonopenthyl)guanine
    25% identity, 93% coverage of query (49.7 bits)

2ai3A Purine nucleoside phosphorylase from calf spleen
    26% identity, 84% coverage of query (49.3 bits)

2ai2A Purine nucleoside phosphorylase from calf spleen
    26% identity, 84% coverage of query (49.3 bits)

2ai1A Purine nucleoside phosphorylase from calf spleen
    26% identity, 84% coverage of query (49.3 bits)

3ggsA Human purine nucleoside phosphorylase double mutant e201q,n243d complexed with 2-fluoro-2'-deoxyadenosine
    25% identity, 96% coverage of query (48.1 bits)

3gb9A Human purine nucleoside phosphorylase double mutant e201q,n243d complexed with 2-fluoroadenine
    25% identity, 96% coverage of query (48.1 bits)

4m1eB / D5SMY7 Crystal structure of purine nucleoside phosphorylase i from planctomyces limnophilus dsm 3776, nysgrc target 029364.
    27% identity, 74% coverage of query (47.8 bits)

3lbaA / Q8DTU4 The crystal structure of smu.1229 from streptococcus mutans ua159 bound to hypoxanthine
    28% identity, 87% coverage of query (47.4 bits)

4nsnA / B2RKN6 Crystal structure of purine nucleoside phosphorylase from porphyromonas gingivalis atcc 33277, nysgrc target 030972, orthorhombic symmetry
    26% identity, 70% coverage of query (47.0 bits)

4ns1A Crystal structure of purine nucleoside phosphorylase from porphyromonas gingivalis atcc 33277, nysgrc target 30972
    26% identity, 70% coverage of query (47.0 bits)

3fucC Recombinant calf purine nucleoside phosphorylase in a binary complex with multisubstrate analogue inhibitor 9-(5',5'-difluoro-5'- phosphonopentyl)-9-deazaguanine structure in a new space group with one full trimer in the asymmetric unit
    26% identity, 84% coverage of query (45.8 bits)

3fucA Recombinant calf purine nucleoside phosphorylase in a binary complex with multisubstrate analogue inhibitor 9-(5',5'-difluoro-5'- phosphonopentyl)-9-deazaguanine structure in a new space group with one full trimer in the asymmetric unit
    26% identity, 84% coverage of query (45.8 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory