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Searching for up to 100 curated homologs for GFF2641 FitnessBrowser__psRCH2:GFF2641 (96 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

catC / P00948 muconolactone isomerase subunit (EC 5.3.3.4) from Pseudomonas putida (see 3 papers)
CATC_PSEPU / P00948 Muconolactone Delta-isomerase; MIase; EC 5.3.3.4 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
    82% identity, 100% coverage of query (169 bits)

PfGW456L13_3823 Muconolactone isomerase (EC 5.3.3.4) from Pseudomonas fluorescens GW456-L13
    82% identity, 100% coverage of query (167 bits)

PS417_23665 Muconolactone isomerase (EC 5.3.3.4) from Pseudomonas simiae WCS417
    80% identity, 100% coverage of query (164 bits)

catC / A0F0B4 muconolactone isomerase (EC 5.3.3.4) from Pseudomonas reinekei (see paper)
    80% identity, 100% coverage of query (163 bits)

catC2 / BAA75212.1 muconolactone isomerase from Frateuria sp. ANA-18 (see paper)
    70% identity, 100% coverage of query (144 bits)

catC / AAC46431.1 muconolactone isomerase from Acinetobacter baylyi (see 8 papers)
    61% identity, 99% coverage of query (125 bits)

catCI / BAA75206.1 muconolactone isomerase from Frateuria sp. ANA-18 (see paper)
catC1 / BAC82533.1 muconolactone isomerase from Frateuria sp. ANA-18 (see 3 papers)
    59% identity, 99% coverage of query (123 bits)

catC / P80573 muconolactone isomerase monomer (EC 5.3.3.4) from Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (see paper)
CATC_CUPPJ / P80573 Muconolactone Delta-isomerase; MIase; EC 5.3.3.4 from Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Cupriavidus necator (strain JMP 134)) (see paper)
    59% identity, 96% coverage of query (110 bits)

catC / BAE46389.1 muconolactone isomerase from Rhodococcus sp. AN-22 (see paper)
    55% identity, 95% coverage of query (109 bits)

clcF / Q8G9L0 5-chloromuconolactone dehalogenase monomer from Rhodococcus opacus (see 2 papers)
    48% identity, 98% coverage of query (102 bits)

3zo7B / Q8G9L0 Crystal structure of clcfe27a with substrate (see paper)
    47% identity, 98% coverage of query (99.8 bits)

mmlJ / Q471R4 methylmuconolactone isomerase monomer (EC 5.3.3.4) from Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (see 2 papers)
mmlJ / CAA67959.1 methylmuconolactone isomerase from Cupriavidus necator (see paper)
    51% identity, 95% coverage of query (97.4 bits)

C5MR75 muconolactone DELTA-isomerase (EC 5.3.3.4) from Pseudomonas reinekei (see paper)
    49% identity, 95% coverage of query (81.3 bits)

Build an alignment

Build an alignment for GFF2641 and 13 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory