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Searching for up to 100 curated homologs for GFF273 FitnessBrowser__Marino:GFF273 (636 a.a.)

Found high-coverage hits (≥70%) to 34 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q8ZHG8 arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis (see paper)
    55% identity, 100% coverage of query (713 bits)

Q7MK24 arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus (see paper)
    55% identity, 98% coverage of query (707 bits)

3n2oA / Q7MK24 X-ray crystal structure of arginine decarboxylase complexed with arginine from vibrio vulnificus (see paper)
    55% identity, 98% coverage of query (706 bits)

3n2oB X-ray crystal structure of arginine decarboxylase complexed with arginine from vibrio vulnificus
    55% identity, 98% coverage of query (706 bits)

SpeA / b2938 arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
speA / P21170 biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli (strain K12) (see 48 papers)
SPEA_ECOLI / P21170 Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli (strain K12) (see 3 papers)
P21170 arginine decarboxylase (EC 4.1.1.19) from Escherichia coli (see paper)
    54% identity, 100% coverage of query (701 bits)

3nzqA / P21170 Crystal structure of biosynthetic arginine decarboxylase adc (spea) from escherichia coli, northeast structural genomics consortium target er600 (see paper)
    54% identity, 98% coverage of query (697 bits)

speA / Q9HUX1 arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
A0A0H2ZHZ8 arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa (see paper)
Q9HUX1 arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa (see paper)
    50% identity, 100% coverage of query (622 bits)

Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri RCH2
    49% identity, 100% coverage of query (611 bits)

Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens FW300-N1B4
    49% identity, 100% coverage of query (610 bits)

A0A076IP90 arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei (see paper)
    43% identity, 100% coverage of query (530 bits)

Q8YRP3 arginine decarboxylase (EC 4.1.1.19) from Nostoc sp. PCC 7120 = FACHB-418 (see paper)
    41% identity, 98% coverage of query (503 bits)

P74576 arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp. (see paper)
    40% identity, 99% coverage of query (474 bits)

P72587 arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp. PCC 6803 (see paper)
    37% identity, 99% coverage of query (442 bits)

SPE2_ARATH / O23141 Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana (Mouse-ear cress) (see 11 papers)
O23141 arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana (see 2 papers)
    37% identity, 94% coverage of query (385 bits)

MADC2 / Q9M618 arginine decarboxylase (EC 4.1.1.19) from Brassica juncea (see paper)
    36% identity, 94% coverage of query (383 bits)

ADC / Q43075 arginine decarboxylase (EC 4.1.1.19) from Pisum sativum (see paper)
CAA85773.1 arginine decarboxylase from Pisum sativum (see paper)
    37% identity, 94% coverage of query (380 bits)

ADC1B_TOBAC / A0A1S3WYR7 Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum (Common tobacco) (see paper)
    37% identity, 94% coverage of query (378 bits)

SPE1_ARATH / Q9SI64 Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana (Mouse-ear cress) (see 7 papers)
Q9SI64 arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana (see 3 papers)
    37% identity, 94% coverage of query (376 bits)

ADC1A_TOBAC / A0A1S3YCW2 Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum (Common tobacco) (see paper)
    37% identity, 94% coverage of query (374 bits)

Q5R1Y5 arginine decarboxylase (EC 4.1.1.19) from Malus domestica (see paper)
    36% identity, 95% coverage of query (374 bits)

B3Y023 arginine decarboxylase (EC 4.1.1.19) from Prunus persica (see paper)
    37% identity, 93% coverage of query (372 bits)

Q9LDM9 arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum (see paper)
    34% identity, 97% coverage of query (368 bits)

Q9M7K9 arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum (see paper)
    36% identity, 93% coverage of query (367 bits)

SPE1_ORYSJ / Q9SNN0 Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
Q9SNN0 arginine decarboxylase (EC 4.1.1.19) from Oryza sativa (see 2 papers)
    38% identity, 94% coverage of query (366 bits)

Q39827 arginine decarboxylase (EC 4.1.1.19) from Glycine max (see paper)
    37% identity, 93% coverage of query (366 bits)

F6KDF0 arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata (see 2 papers)
    37% identity, 94% coverage of query (365 bits)

Q71S28 arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum (see paper)
    35% identity, 93% coverage of query (360 bits)

MADC3 / Q9M617 arginine decarboxylase (EC 4.1.1.19) from Brassica juncea (see paper)
    36% identity, 94% coverage of query (355 bits)

ADC / P49726 arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum (see paper)
    39% identity, 80% coverage of query (349 bits)

Q0PAC6 arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni (see paper)
    34% identity, 98% coverage of query (346 bits)

SPE1 / P22220 arginine decarboxylase (EC 4.1.1.19) from Avena sativa (see paper)
P22220 arginine decarboxylase (EC 4.1.1.19) from Avena sativa (see paper)
    35% identity, 92% coverage of query (330 bits)

O25176 arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori (see 2 papers)
    35% identity, 90% coverage of query (323 bits)

3nzpB / Q0PAC6 Crystal structure of the biosynthetic arginine decarboxylase spea from campylobacter jejuni, northeast structural genomics consortium target br53 (see paper)
    33% identity, 98% coverage of query (321 bits)

ADC2_ORYSJ / Q7XRA1 Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa subsp. japonica (Rice) (see paper)
    32% identity, 92% coverage of query (311 bits)

Build an alignment

Build an alignment for GFF273 and 34 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory