Sites on a Tree

 

Searching for up to 100 curated homologs for GFF2753 FitnessBrowser__Marino:GFF2753 (330 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

paaA / Q845J6 ring 1,2-phenylacetyl-CoA epoxidase PaaA subunit (EC 1.14.13.149) from Pseudomonas sp. Y2 (see paper)
    86% identity, 100% coverage of query (606 bits)

YdbO / b1388 phenylacetyl-CoA 1,2-epoxidase, monooxygenase subunit (EC 1.14.13.149) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
paaA / P76077 phenylacetyl-CoA 1,2-epoxidase, monooxygenase subunit (EC 1.14.13.149) from Escherichia coli (strain K12) (see 2 papers)
PAAA_ECOLI / P76077 1,2-phenylacetyl-CoA epoxidase, subunit A; 1,2-phenylacetyl-CoA epoxidase, catalytic subunit alpha; 1,2-phenylacetyl-CoA monooxygenase, subunit A; EC 1.14.13.149 from Escherichia coli (strain K12) (see 6 papers)
    67% identity, 94% coverage of query (454 bits)

3pw1A The phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl- coa
    67% identity, 92% coverage of query (450 bits)

3pvyA The phenylacetyl-coa monooxygenase paaac subcomplex with coenzyme a
    67% identity, 92% coverage of query (450 bits)

3pvtA The phenylacetyl-coa monooxygenase paaac subcomplex with 3- hydroxybutanoyl-coa
    67% identity, 92% coverage of query (450 bits)

3pw8C The phenylacetyl-coa monooxygenase paaac subcomplex with acetyl-coa
    67% identity, 91% coverage of query (449 bits)

4ii4A / P76077 The phenylacetyl-coa monooxygenase - mutant paaa e49q k68q - paac wild type subcomplex with benzoyl-coa
    66% identity, 92% coverage of query (448 bits)

antH / A3KI28 anthraniloyl-[acp] 1,2-epoxidase subunit H from Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) (see 2 papers)
    55% identity, 87% coverage of query (355 bits)

Build an alignment

Build an alignment for GFF2753 and 8 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory