Sites on a Tree

 

Searching for up to 100 curated homologs for GFF3168 FitnessBrowser__WCS417:GFF3168 (580 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Ac3H11_796 ABC transporter for Glycerol, periplasmic substrate-binding component from Acidovorax sp. GW101-3H11
    72% identity, 95% coverage of query (825 bits)

TC 3.A.1.1.35 / G3LHZ3 GlpV, component of Glycerol uptake porter, GlpSTPQV from Rhizobium leguminosarum bv. viciae
    68% identity, 96% coverage of query (777 bits)

Build an alignment

Build an alignment for GFF3168 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

1eu8A / Q7LYW7 Structure of trehalose maltose binding protein from thermococcus litoralis (see paper)
    25% identity, 71% coverage of query (53.9 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory